Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP1B4_chrX_120357089_120388237	0/0	t0006	3684	17	14	3	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0007	3684	15	5	2	8	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0008	3684	7	6	1	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0009	3684	5	5	0	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0010	3684	2	0	2	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0011	3684	2	2	0	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0012	3684	1	1	0	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0013	3684	1	1	0	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0014	3684	1	0	1	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0015	3684	1	0	0	1	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0016	3684	1	0	1	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0017	3683	1	0	0	1	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0018	3684	1	1	0	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0019	3683	1	0	0	1	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0020	3684	1	0	0	1	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0021	3684	1	0	1	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0022	3684	1	1	0	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0023	3684	1	0	0	1	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0024	3683	1	1	0	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0025	3683	1	1	0	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0026	3684	1	0	0	0	1	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0027	3684	1	0	1	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0028	3682	1	0	0	1	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0029	3686	1	0	0	1	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP23_chr12_57936567_57964148	0/1	t0001	2394	190	24	45	87	7	26	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0002	2394	148	25	23	83	9	8	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0003	2394	8	7	1	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0004	2394	6	6	0	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0005	2394	5	4	1	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0006	2394	4	0	0	4	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0007	2394	4	3	1	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0008	2394	4	0	0	0	0	4	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0009	2394	4	4	0	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0010	2394	4	4	0	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0011	2394	2	0	0	2	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0012	2394	2	2	0	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0013	2394	2	0	2	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0014	2394	1	0	0	1	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0015	2394	1	1	0	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0016	2394	1	0	0	1	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0017	2394	1	1	0	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0018	2394	1	0	0	1	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0019	2394	1	0	0	1	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0020	2394	1	0	1	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0021	2394	1	1	0	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0022	2394	1	0	1	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	t0023	2394	1	0	1	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP2A1_chr16_28873488_28909466	0/0	t0001	509	291	61	35	147	10	38	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	1/1	t0002	509	56	2	20	27	2	3	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	t0003	509	25	24	1	0	0	0	copy fasta	ATP2A1	chr16	28873488	28909466