JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POP5_chr12_120573764_120586402	0/0	t0010	595	1	0	1	0	0	0	copy fasta	POP5	chr12	120573764	120586402
POP5_chr12_120573764_120586402	0/0	t0011	595	1	0	0	1	0	0	copy fasta	POP5	chr12	120573764	120586402
POP5_chr12_120573764_120586402	0/0	t0012	595	1	0	1	0	0	0	copy fasta	POP5	chr12	120573764	120586402
POP7_chr7_100701121_100712486	1/1	t0001	428	358	80	56	163	13	44	copy fasta	POP7	chr7	100701121	100712486
POP7_chr7_100701121_100712486	0/0	t0002	428	9	1	3	0	1	4	copy fasta	POP7	chr7	100701121	100712486
POP7_chr7_100701121_100712486	0/0	t0003	428	6	5	1	0	0	0	copy fasta	POP7	chr7	100701121	100712486
POP7_chr7_100701121_100712486	0/0	t0004	428	3	3	0	0	0	0	copy fasta	POP7	chr7	100701121	100712486
POP7_chr7_100701121_100712486	0/0	t0005	428	2	0	0	2	0	0	copy fasta	POP7	chr7	100701121	100712486
POP7_chr7_100701121_100712486	0/0	t0006	428	2	0	0	0	2	0	copy fasta	POP7	chr7	100701121	100712486
POP7_chr7_100701121_100712486	0/0	t0007	428	1	1	0	0	0	0	copy fasta	POP7	chr7	100701121	100712486
POP7_chr7_100701121_100712486	0/0	t0008	428	1	0	0	1	0	0	copy fasta	POP7	chr7	100701121	100712486
POPDC2_chr3_119637056_119665589	1/1	t0001	716	199	33	26	114	5	19	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	t0002	716	94	4	20	59	4	7	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	t0003	716	90	31	16	17	3	23	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	t0004	716	6	6	0	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	t0005	716	5	0	3	0	2	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	t0006	716	3	0	3	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	t0007	716	3	3	0	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	t0008	716	2	2	0	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	t0009	716	2	0	0	2	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	t0010	716	1	0	0	1	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	t0011	716	1	1	0	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	t0012	716	1	0	0	1	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	t0013	728	1	0	0	0	0	1	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	t0014	716	1	1	0	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	t0015	716	1	1	0	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC3_chr6_105152900_105185014	0/1	t0001	1000	117	7	25	65	5	14	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	1/0	t0002	1004	43	18	5	15	0	4	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0003	1004	28	19	2	5	0	2	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0004	1004	17	15	0	1	0	1	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0005	1000	11	7	3	0	0	1	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0006	1000	11	11	0	0	0	0	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0007	1004	8	7	1	0	0	0	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0008	1004	4	0	0	4	0	0	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0009	1000	4	0	4	0	0	0	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0010	1004	4	4	0	0	0	0	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0011	1004	2	1	0	1	0	0	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0012	1000	2	0	0	0	0	2	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0013	1000	2	0	0	2	0	0	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0014	1004	1	1	0	0	0	0	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0015	1000	1	0	0	1	0	0	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0016	1000	1	0	0	0	1	0	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0017	1004	1	0	0	1	0	0	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	t0018	1004	1	0	0	1	0	0	copy fasta	POPDC3	chr6	105152900	105185014
PORCN_chrX_48503992_48525808	1/1	t0001	482	276	67	41	128	9	29	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	t0002	480	9	8	1	0	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	t0003	484	6	5	0	1	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	t0004	482	1	0	1	0	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	t0005	482	1	0	1	0	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	t0006	482	1	0	0	1	0	0	copy fasta	PORCN	chrX	48503992	48525808