JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PORCN_chrX_48503992_48525808	0/0	t0007	482	1	0	0	0	0	1	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	t0008	486	1	0	1	0	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	t0009	483	1	0	0	1	0	0	copy fasta	PORCN	chrX	48503992	48525808
POR_chr7_75910155_75991855	1/1	t0001	413	195	63	43	55	11	21	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	t0002	413	68	14	14	27	0	13	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	t0003	413	6	0	2	4	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	t0004	413	3	0	0	3	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	t0005	413	2	2	0	0	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	t0006	413	2	0	1	0	1	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	t0007	399	1	1	0	0	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	t0008	413	1	0	0	1	0	0	copy fasta	POR	chr7	75910155	75991855
POSTN_chr13_37557585_37603768	1/1	t0001	791	320	91	55	136	12	24	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	t0002	807	62	4	6	46	1	5	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	t0003	791	26	0	4	11	4	7	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	t0004	791	2	0	0	1	1	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	t0005	807	1	0	0	1	0	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	t0006	791	1	0	0	0	0	1	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	t0007	791	1	1	0	0	0	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	t0008	791	1	0	0	1	0	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	t0009	791	1	0	1	0	0	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	t0010	807	1	0	0	0	0	1	copy fasta	POSTN	chr13	37557585	37603768
POT1_chr7_124817386_124934825	1/1	t0001	2020	203	74	33	64	11	19	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	t0002	2020	71	0	7	52	6	6	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	t0003	2020	63	4	15	34	0	10	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	t0004	2020	2	0	2	0	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	t0005	2020	2	1	1	0	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	t0006	2020	1	1	0	0	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	t0007	2020	1	1	0	0	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	t0008	2020	1	0	0	0	1	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	t0009	2020	1	1	0	0	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	t0010	2020	1	0	0	0	0	1	copy fasta	POT1	chr7	124817386	124934825
POTEB2_chr15_20830372_20871314	0/0	t0001	53	2	0	1	1	0	0	copy fasta	POTEB2	chr15	20830372	20871314
POTEB2_chr15_20830372_20871314	0/0	t0002	53	2	0	1	1	0	0	copy fasta	POTEB2	chr15	20830372	20871314
POTEB3_chr15_21400401_21445499	0/1	t0001	4071	11	2	2	4	0	2	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0002	4071	6	1	2	2	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0003	4071	5	0	1	4	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0004	4071	4	0	1	1	0	2	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0005	4071	2	0	0	2	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0006	4071	2	2	0	0	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0007	4071	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0008	4069	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0009	4069	1	1	0	0	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0010	4069	1	0	0	0	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0011	4069	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0012	4071	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0013	4069	1	0	1	0	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0014	4071	1	0	1	0	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	1/0	t0015	4071	1	0	0	0	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0016	4071	1	0	0	0	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0017	4071	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499