JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POTEB3_chr15_21400401_21445499	0/0	t0018	4071	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0019	4070	1	0	0	0	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0020	4071	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0021	4071	1	1	0	0	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0022	4069	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0023	4069	1	1	0	0	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0024	4071	1	0	1	0	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0025	4071	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0026	4071	1	0	1	0	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0027	4071	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0028	4070	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0029	4071	1	1	0	0	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	t0030	4071	1	1	0	0	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB_chr15_21841329_21882735	0/0	t0001	495	17	0	7	9	1	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	t0002	508	13	7	0	3	1	2	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	t0003	508	9	9	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	t0004	508	9	0	4	5	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	t0005	508	6	2	3	1	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	t0006	508	5	2	0	3	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	t0007	495	1	1	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	t0008	509	1	1	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	t0009	508	1	1	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	t0010	508	1	1	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	t0011	508	1	0	0	1	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEC_chr18_14502339_14548600	1/0	t0001	5014	82	15	16	41	1	8	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/1	t0002	5014	65	22	17	11	4	10	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0003	5013	57	1	16	35	1	4	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0004	5014	17	0	0	14	0	3	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0005	5013	12	3	4	1	3	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0006	5014	11	4	4	1	0	2	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0007	5014	10	6	2	0	2	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0008	5014	10	9	1	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0009	5013	9	0	0	9	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0010	5013	9	1	0	7	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0011	5014	7	0	0	7	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0012	5013	7	7	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0013	5014	7	0	0	7	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0014	5007	6	6	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0015	5013	5	0	0	5	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0016	5013	4	0	0	4	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0017	5014	4	0	0	4	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0018	5014	4	0	0	4	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0019	5013	3	0	0	3	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0020	5014	3	0	0	3	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0021	5013	2	2	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0022	5014	2	2	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0023	5014	2	0	2	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0024	5014	2	2	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0025	5013	2	2	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0026	5014	2	2	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600