JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POTEC_chr18_14502339_14548600	0/0	t0027	5013	2	2	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0028	5013	2	2	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0029	5013	2	1	1	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0030	5013	2	0	0	2	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0031	5015	2	0	0	1	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0032	5013	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0033	5014	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0034	5013	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0035	5013	1	0	0	0	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0036	5013	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0037	5013	1	0	0	0	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0038	5013	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0039	5013	1	0	0	0	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0040	5013	1	0	0	0	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0041	5014	1	0	1	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0042	5010	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0043	5013	1	0	1	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0044	5014	1	0	1	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0045	5014	1	0	0	0	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0046	5013	1	0	0	0	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0047	5014	1	0	0	0	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0048	5013	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0049	5013	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0050	5013	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0051	5014	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0052	5013	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0053	5014	1	0	0	0	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0054	5013	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0055	5014	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0056	5013	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0057	5015	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0058	5014	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0059	5012	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0060	5014	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0061	5013	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0062	5014	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0063	5013	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0064	5014	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	t0065	5014	1	0	0	0	1	0	copy fasta	POTEC	chr18	14502339	14548600
POTED_chr21_13604777_13650823	0/0	t0001	4711	70	6	3	54	1	6	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/1	t0002	4710	61	7	36	0	4	13	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0003	4711	56	1	3	47	2	3	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	1/0	t0004	4710	46	2	3	34	1	5	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0005	4711	34	0	1	30	1	2	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0006	4711	28	12	5	8	1	2	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0007	4711	27	12	10	0	2	3	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0008	4710	8	8	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0009	4711	8	8	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0010	4711	7	0	0	7	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0011	4711	6	5	1	0	0	0	copy fasta	POTED	chr21	13604777	13650823