JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POTED_chr21_13604777_13650823	0/0	t0012	4710	5	5	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0013	4711	5	4	1	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0014	4711	4	0	3	0	0	1	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0015	4647	3	0	3	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0016	4710	3	3	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0017	4711	3	3	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0018	4711	2	1	1	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0019	4710	2	1	0	0	0	1	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0020	4711	2	0	0	0	0	2	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0021	4708	2	2	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0022	4711	2	1	1	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0023	4711	2	2	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0024	4711	2	0	0	2	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0025	4710	2	0	1	0	0	1	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0026	4707	1	1	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0027	4710	1	1	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0028	4711	1	1	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0029	4711	1	0	0	0	0	1	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0030	4710	1	1	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0031	4711	1	0	0	1	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0032	4711	1	0	0	1	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0033	4711	1	0	0	1	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0034	4711	1	0	0	1	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0035	4711	1	0	0	1	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0036	4711	1	1	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0037	4711	1	0	0	0	0	1	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0038	4711	1	0	0	1	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0039	4711	1	0	0	0	0	1	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0040	4711	1	1	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0041	4711	1	1	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0042	4711	1	0	1	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0043	4711	1	0	0	1	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0044	4711	1	0	0	0	0	1	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0045	4710	1	0	0	1	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0046	4710	1	0	0	1	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0047	4782	1	1	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0048	4782	1	1	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0049	4710	1	0	1	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0050	4710	1	0	0	0	0	1	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	t0051	4710	1	0	0	1	0	0	copy fasta	POTED	chr21	13604777	13650823
POTEE_chr2_131204536_131270278	0/1	t0001	1224	99	7	24	48	5	14	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	1/0	t0002	1224	66	22	4	23	5	11	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0003	1224	44	9	9	18	2	6	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0004	1221	13	13	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0005	1224	10	8	1	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0006	1224	9	9	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0007	1220	7	7	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0008	1224	6	0	2	4	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0009	1224	5	5	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0010	1224	3	1	2	0	0	0	copy fasta	POTEE	chr2	131204536	131270278