JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POTEE_chr2_131204536_131270278	0/0	t0011	1220	3	3	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0012	1224	2	0	0	2	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0013	1224	2	0	0	0	0	2	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0014	1220	2	1	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0015	1224	2	2	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0016	1224	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0017	1224	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0018	1224	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0019	1224	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0020	1224	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0021	1224	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0022	1224	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0023	1224	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0024	1224	1	0	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0025	1224	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0026	1224	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0027	1220	1	0	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0028	1220	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0029	1221	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	t0030	1224	1	0	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEF_chr2_130068535_130134222	1/0	t0001	1110	56	13	13	20	1	8	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0002	1118	52	11	7	25	2	7	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0003	1118	21	20	1	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0004	1118	5	5	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0005	1118	4	3	1	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0006	1118	3	3	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0007	1110	3	3	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0008	1110	3	3	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0009	1110	3	0	0	3	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0010	1110	2	0	1	0	1	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0011	1118	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0012	1118	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0013	1118	1	0	0	1	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0014	1118	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0015	1118	1	0	1	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0016	1117	1	0	1	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0017	1118	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0018	1118	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0019	1118	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0020	1110	1	0	0	0	0	1	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0021	1109	1	0	0	1	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0022	1110	1	0	1	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	t0023	1110	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEG_chr14_19397486_19439341	0/0	t0001	677	29	3	8	14	0	4	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	1/0	t0002	677	13	2	3	6	0	1	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0003	677	11	4	1	3	0	3	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0004	677	10	5	1	2	0	2	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0005	677	9	2	0	2	1	4	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0006	677	7	0	0	7	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0007	677	6	0	3	1	1	1	copy fasta	POTEG	chr14	19397486	19439341