JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POTEG_chr14_19397486_19439341	0/0	t0008	677	5	1	2	2	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0009	677	3	3	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0010	677	3	3	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0011	677	2	1	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0012	677	2	1	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0013	677	2	2	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0014	677	2	0	2	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0015	677	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0016	677	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0017	677	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0018	677	1	0	0	0	0	1	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0019	677	1	0	1	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0020	677	1	0	1	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	t0021	677	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEH_chr22_15685026_15726631	1/0	t0001	399	2	1	0	0	0	0	copy fasta	POTEH	chr22	15685026	15726631
POTEH_chr22_15685026_15726631	0/0	t0002	399	1	1	0	0	0	0	copy fasta	POTEH	chr22	15685026	15726631
POTEI_chr2_130454455_130514328	0/0	t0001	3455	94	12	38	27	5	12	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0002	3455	5	0	3	1	0	1	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0003	3454	4	4	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0004	3455	2	2	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0005	3455	1	0	0	0	0	1	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0006	3455	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0007	3455	1	0	0	0	0	1	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0008	3455	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0009	3455	1	0	0	0	0	1	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	1/0	t0010	3455	1	0	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0011	3454	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0012	3455	1	0	1	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0013	3455	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0014	3455	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0015	3455	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0016	3455	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0017	3455	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0018	3455	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0019	3455	1	0	1	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0020	3455	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0021	3455	1	0	0	0	1	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0022	3455	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0023	3455	1	0	1	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	t0024	3455	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEJ_chr2_130606440_130663037	0/1	t0001	254	129	23	22	57	4	22	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	t0002	254	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	t0003	254	1	0	0	1	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEM_chr14_18962434_19008752	0/0	t0001	5139	21	2	5	13	0	1	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0002	5139	5	0	0	5	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0003	5139	2	0	1	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0004	5139	2	1	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0005	5139	2	0	0	2	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0006	5139	2	0	0	2	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	1/0	t0007	5139	2	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752