JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POTEM_chr14_18962434_19008752	0/0	t0008	5139	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0009	5139	1	0	0	0	0	1	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0010	5139	1	1	0	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0011	5139	1	1	0	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0012	5139	1	1	0	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0013	5139	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0014	5139	1	0	0	0	0	1	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0015	5139	1	0	0	0	0	1	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0016	5139	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0017	5139	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0018	5139	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0019	5139	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0020	5139	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0021	5139	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0022	5139	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0023	5139	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0024	5139	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0025	5139	1	1	0	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0026	5139	1	0	0	0	0	1	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0027	5139	1	0	0	0	0	1	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0028	5139	1	0	0	0	0	1	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0029	5139	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0030	5139	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0031	5139	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0032	5139	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0033	5139	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0034	5139	1	0	0	0	0	1	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0035	5139	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0036	5139	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0037	5139	1	1	0	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	t0038	5139	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POU1F1_chr3_87254404_87281584	1/0	t0001	613	213	53	36	103	5	15	copy fasta	POU1F1	chr3	87254404	87281584
POU1F1_chr3_87254404_87281584	0/1	t0002	613	97	10	26	39	7	14	copy fasta	POU1F1	chr3	87254404	87281584
POU1F1_chr3_87254404_87281584	0/0	t0003	611	80	8	11	49	0	12	copy fasta	POU1F1	chr3	87254404	87281584
POU1F1_chr3_87254404_87281584	0/0	t0004	611	7	6	0	1	0	0	copy fasta	POU1F1	chr3	87254404	87281584
POU1F1_chr3_87254404_87281584	0/0	t0005	611	6	6	0	0	0	0	copy fasta	POU1F1	chr3	87254404	87281584
POU1F1_chr3_87254404_87281584	0/0	t0006	613	6	5	1	0	0	0	copy fasta	POU1F1	chr3	87254404	87281584
POU1F1_chr3_87254404_87281584	0/0	t0007	613	6	1	2	3	0	0	copy fasta	POU1F1	chr3	87254404	87281584
POU1F1_chr3_87254404_87281584	0/0	t0008	613	1	1	0	0	0	0	copy fasta	POU1F1	chr3	87254404	87281584
POU1F1_chr3_87254404_87281584	0/0	t0009	613	1	0	0	0	0	1	copy fasta	POU1F1	chr3	87254404	87281584
POU1F1_chr3_87254404_87281584	0/0	t0010	612	1	1	0	0	0	0	copy fasta	POU1F1	chr3	87254404	87281584
POU1F1_chr3_87254404_87281584	0/0	t0011	613	1	0	0	1	0	0	copy fasta	POU1F1	chr3	87254404	87281584
POU1F1_chr3_87254404_87281584	0/0	t0012	613	1	1	0	0	0	0	copy fasta	POU1F1	chr3	87254404	87281584
POU2AF1_chr11_111347255_111384275	0/0	t0001	2109	43	4	4	32	0	3	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	1/0	t0002	2105	37	1	5	26	1	3	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0003	2065	36	4	5	25	0	2	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0004	2069	24	7	2	14	0	1	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0005	2113	24	10	7	5	2	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0006	2105	19	2	3	10	3	1	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0007	2101	17	0	4	12	0	1	copy fasta	POU2AF1	chr11	111347255	111384275