JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POU2AF1_chr11_111347255_111384275	0/0	t0008	2113	15	0	2	10	0	3	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0009	2109	15	7	4	2	0	2	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0010	2073	14	3	0	9	1	1	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0011	2117	12	1	6	1	1	3	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0012	2097	11	0	1	6	1	3	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0013	2077	10	2	4	4	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0014	2117	10	3	0	5	1	1	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0015	2052	8	0	5	3	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0016	2045	6	2	3	0	0	1	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0017	2093	6	0	1	5	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0018	2061	5	0	4	1	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0019	2069	4	4	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0020	2113	4	4	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0021	2109	4	3	1	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0022	2089	3	0	0	3	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0023	2077	2	2	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0024	2061	2	2	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0025	2077	2	2	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0026	2049	2	0	2	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0027	2081	2	0	1	1	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0028	2105	2	1	0	1	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0029	2121	2	0	1	0	1	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0030	2105	2	2	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0031	2105	2	2	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0032	2101	2	0	0	0	2	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0033	2000	2	1	0	0	0	1	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0034	2060	2	0	2	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0035	2122	1	0	0	0	1	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0036	2134	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0037	2166	1	0	0	1	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0038	2073	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0039	2049	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0040	2053	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0041	2057	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0042	2061	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0043	2057	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0044	2065	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0045	2069	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0046	2073	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0047	2081	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/1	t0048	2045	1	0	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0049	2105	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0050	2121	1	0	0	1	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0051	2113	1	0	0	1	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0052	2101	1	0	0	1	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0053	2101	1	0	0	1	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0054	2105	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0055	2105	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0056	2105	1	0	1	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	t0057	2105	1	0	0	0	0	1	copy fasta	POU2AF1	chr11	111347255	111384275