Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP2A1_chr16_28873488_28909466	0/0	t0004	509	4	0	0	4	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	t0005	509	1	1	0	0	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	t0006	509	1	0	0	1	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	t0007	498	1	0	0	1	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	t0008	509	1	0	0	0	0	1	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A2_chr12_110276247_110356093	1/0	t0001	5167	110	42	24	21	8	14	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0002	5171	29	17	3	5	1	3	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/1	t0003	5167	29	1	18	0	5	4	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0004	5171	10	9	1	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0005	5167	8	1	4	0	1	2	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0006	5167	6	5	1	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0007	5167	5	0	4	0	1	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0008	5167	2	0	0	2	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0009	5167	2	0	2	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0010	5167	2	0	0	2	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0011	5171	2	2	0	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0012	5171	2	1	1	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0013	5167	2	0	0	2	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0014	5167	2	1	1	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0015	5167	2	2	0	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0016	5167	1	0	0	0	0	1	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0017	5171	1	1	0	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0018	5171	1	1	0	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0019	5171	1	1	0	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0020	5171	1	1	0	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0021	5167	1	1	0	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0022	5167	1	0	0	1	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0023	5167	1	0	0	1	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0024	5167	1	1	0	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0025	5167	1	0	0	0	0	1	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0026	5167	1	0	1	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0027	5167	1	0	0	0	0	1	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0028	5167	1	0	1	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0029	5167	1	0	1	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	t0030	5167	1	1	0	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A3_chr17_3918873_3969437	0/1	t0001	1696	147	52	32	38	8	16	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0002	1696	51	8	18	13	3	9	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0003	1696	30	0	11	19	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0004	1696	25	2	6	14	1	2	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0005	1715	12	0	0	9	0	3	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0006	1715	11	0	0	9	0	2	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0007	1696	5	5	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0008	1696	5	1	4	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	1/0	t0009	1696	4	3	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0010	1696	4	4	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0011	1696	4	0	3	0	0	1	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0012	1715	2	0	0	0	0	2	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0013	1696	2	2	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0014	1696	2	2	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0015	1696	2	2	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437