JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POU2F3_chr11_120235140_120324945	0/0	t0009	1759	5	0	0	4	0	1	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0010	1760	5	5	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0011	1758	4	0	0	1	1	2	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0012	1758	3	2	1	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0013	1758	3	0	0	1	0	2	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0014	1759	3	0	1	1	0	1	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0015	1760	2	2	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0016	1759	2	0	0	0	0	2	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0017	1758	2	0	0	0	0	2	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0018	1759	2	0	0	2	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0019	1758	1	1	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0020	1758	1	0	0	1	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0021	1759	1	0	0	0	0	1	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0022	1759	1	1	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0023	1758	1	1	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0024	1758	1	1	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0025	1758	1	0	0	1	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0026	1759	1	0	0	0	1	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0027	1758	1	0	0	1	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0028	1758	1	0	0	1	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0029	1759	1	0	0	1	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0030	1759	1	1	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0031	1759	1	0	0	0	1	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0032	1758	1	1	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	t0033	1758	1	0	0	1	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU3F1_chr1_38038829_38051793	0/0	t0001	1610	126	13	18	90	0	5	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0002	1609	96	35	15	30	5	11	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	1/1	t0003	1610	75	11	27	9	9	17	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0004	1612	22	6	2	10	1	3	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0005	1611	12	0	2	10	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0006	1610	9	8	0	1	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0007	1609	9	7	0	2	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0008	1609	6	2	1	3	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0009	1611	4	3	0	0	1	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0010	1610	4	4	0	0	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0011	1611	3	2	0	1	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0012	1609	3	0	0	3	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0013	1611	2	0	0	1	0	1	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0014	1610	2	0	1	0	1	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0015	1610	2	0	0	2	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0016	1609	2	0	0	1	0	1	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0017	1611	2	0	0	2	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0018	1612	1	0	0	1	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0019	1612	1	1	0	0	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0020	1610	1	0	0	1	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0021	1609	1	0	0	0	1	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0022	1609	1	1	0	0	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0023	1610	1	0	0	0	0	1	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0024	1608	1	1	0	0	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0025	1609	1	0	0	1	0	0	copy fasta	POU3F1	chr1	38038829	38051793