JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POU3F1_chr1_38038829_38051793	0/0	t0026	1611	1	1	0	0	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0027	1610	1	1	0	0	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	t0028	1612	1	0	0	0	0	1	copy fasta	POU3F1	chr1	38038829	38051793
POU3F2_chr6_98829574_98844458	0/1	t0001	3553	185	14	34	119	2	15	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0002	3553	123	38	25	34	10	16	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	1/0	t0003	3554	44	19	10	5	1	8	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0004	3554	22	0	1	18	0	3	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0005	3553	7	0	0	7	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0006	3553	7	7	0	0	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0007	3553	6	2	0	2	0	2	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0008	3553	4	0	1	0	2	1	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0009	3552	4	1	0	2	0	1	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0010	3553	3	0	1	0	0	2	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0011	3552	3	2	1	0	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0012	3553	3	0	0	3	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0013	3552	2	2	0	0	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0014	3553	2	2	0	0	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0015	3553	2	0	0	2	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0016	3553	2	0	0	0	0	2	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0017	3554	2	0	1	1	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0018	3552	2	2	0	0	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0019	3553	2	2	0	0	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0020	3552	1	1	0	0	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0021	3554	1	0	0	1	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0022	3553	1	0	0	1	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0023	3553	1	0	0	1	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0024	3553	1	0	0	1	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0025	3552	1	1	0	0	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0026	3554	1	1	0	0	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0027	3554	1	1	0	0	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0028	3553	1	1	0	0	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0029	3553	1	0	0	0	1	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	t0030	3553	1	0	0	1	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F3_chr2_104849115_104863574	0/0	t0001	2958	161	17	26	94	5	19	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	1/1	t0002	2958	102	38	17	27	3	15	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0003	2959	63	24	13	18	4	4	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0004	2958	28	6	2	20	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0005	2958	5	4	0	1	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0006	2959	5	0	2	3	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0007	2959	4	0	0	2	0	2	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0008	2958	3	2	1	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0009	2960	3	0	0	2	0	1	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0010	2959	3	0	0	3	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0011	2958	2	0	0	0	2	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0012	2958	2	0	0	2	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0013	2958	1	1	0	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0014	2958	1	0	1	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0015	2958	1	0	0	1	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0016	2958	1	0	0	1	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0017	2958	1	1	0	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574