JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POU3F3_chr2_104849115_104863574	0/0	t0018	2943	1	0	1	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0019	2958	1	0	0	1	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0020	2958	1	0	0	0	1	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0021	2958	1	1	0	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0022	2959	1	0	0	1	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0023	2959	1	0	0	1	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0024	2959	1	0	0	1	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0025	2960	1	0	0	1	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0026	2958	1	0	0	0	1	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0027	2958	1	1	0	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0028	2958	1	0	0	1	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0029	2959	1	0	1	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0030	2959	1	0	1	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0031	2931	1	0	0	0	0	1	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0032	2960	1	0	1	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0033	2958	1	1	0	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0034	2959	1	0	1	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0035	2958	1	1	0	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0036	2959	1	1	0	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	t0037	2958	1	0	1	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F4_chrX_83503290_83517127	0/0	t0001	2752	68	10	10	35	1	12	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0002	2753	52	10	10	29	1	2	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0003	2753	45	9	4	26	2	4	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0004	2753	24	3	12	2	1	6	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0005	2751	16	11	4	1	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0006	2752	14	0	0	14	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0007	2752	13	6	2	4	1	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0008	2754	6	0	3	1	2	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0009	2751	6	4	0	2	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/1	t0010	2754	5	0	2	1	0	1	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0011	2751	5	2	0	3	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0012	2754	4	2	0	2	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0013	2754	4	4	0	0	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0014	2752	4	0	0	4	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0015	2752	3	0	1	1	0	1	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0016	2753	2	2	0	0	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0017	2754	2	1	0	1	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0018	2752	2	2	0	0	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0019	2752	2	2	0	0	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0020	2751	2	2	0	0	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0021	2751	1	1	0	0	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0022	2754	1	0	0	0	0	1	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0023	2755	1	0	1	0	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0024	2753	1	1	0	0	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0025	2755	1	0	0	1	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0026	2753	1	0	0	1	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0027	2753	1	0	0	0	1	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0028	2755	1	0	1	0	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0029	2753	1	0	0	1	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0030	2752	1	0	0	1	0	0	copy fasta	POU3F4	chrX	83503290	83517127