JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POU3F4_chrX_83503290_83517127	0/0	t0031	2754	1	0	0	1	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0032	2752	1	0	0	1	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0033	2752	1	0	1	0	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0034	2752	1	0	0	1	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0035	2753	1	0	0	1	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0036	2747	1	0	0	1	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0037	2753	1	0	0	1	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	1/0	t0038	2753	1	0	0	0	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0039	2753	1	0	0	0	0	1	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0040	2752	1	0	1	0	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	t0041	2752	1	0	0	1	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU4F1_chr13_78593362_78608552	1/1	t0001	3280	204	18	43	111	7	23	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0002	3280	103	24	17	53	4	5	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0003	3280	16	12	0	0	0	4	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0004	3280	14	13	1	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0005	3281	13	1	5	0	2	5	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0006	3280	11	9	2	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0007	3281	9	1	3	5	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0008	3280	9	0	0	9	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0009	3280	6	0	0	6	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0010	3279	4	4	0	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0011	3280	4	0	2	1	0	1	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0012	3281	3	3	0	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0013	3281	3	0	1	2	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0014	3281	3	0	0	2	0	1	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0015	3279	3	0	3	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0016	3280	2	1	1	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0017	3280	2	0	0	0	0	2	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0018	3281	2	1	1	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0019	3280	2	2	0	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0020	3280	2	2	0	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0021	3280	1	1	0	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0022	3280	1	0	1	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0023	3280	1	0	0	1	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0024	3280	1	1	0	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0025	3280	1	0	0	1	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0026	3280	1	1	0	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0027	3280	1	0	0	1	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0028	3281	1	0	0	1	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0029	3280	1	0	0	0	0	1	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0030	3280	1	0	0	1	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0031	3280	1	0	0	1	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0032	3279	1	1	0	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0033	3280	1	1	0	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0034	3280	1	0	0	1	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0035	3279	1	1	0	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0036	3280	1	0	0	0	1	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	t0037	3280	1	1	0	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F2_chr4_146633893_146647474	1/0	t0001	1915	184	43	32	83	5	20	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/1	t0002	1917	137	7	33	76	6	14	copy fasta	POU4F2	chr4	146633893	146647474