JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POU4F2_chr4_146633893_146647474	0/0	t0003	1923	24	7	0	11	3	3	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0004	1919	15	9	1	5	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0005	1915	15	0	3	12	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0006	1915	9	9	0	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0007	1927	3	3	0	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0008	1921	3	3	0	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0009	1915	3	0	0	3	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0010	1919	3	1	2	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0011	1915	2	0	0	1	0	1	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0012	1917	2	0	0	2	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0013	1917	2	0	1	0	1	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0014	1917	2	0	0	2	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0015	1919	2	0	0	2	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0016	1919	1	0	0	1	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0017	1927	1	0	1	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0018	1923	1	1	0	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0019	1919	1	1	0	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0020	1917	1	0	1	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0021	1917	1	0	0	1	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0022	1915	1	0	0	1	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	t0023	1923	1	0	0	0	1	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F3_chr5_146333839_146346728	1/1	t0001	1559	224	43	60	84	14	21	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	t0002	1559	59	1	6	42	3	7	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	t0003	1559	30	27	3	0	0	0	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	t0004	1559	11	11	0	0	0	0	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	t0005	1559	9	5	1	0	1	2	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	t0006	1559	4	4	0	0	0	0	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	t0007	1559	4	0	0	4	0	0	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	t0008	1559	2	0	0	0	0	2	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	t0009	1559	2	0	2	0	0	0	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	t0010	1559	1	1	0	0	0	0	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	t0011	1559	1	0	0	1	0	0	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	t0012	1559	1	0	0	0	0	1	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	t0013	1559	1	1	0	0	0	0	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	t0014	1559	1	1	0	0	0	0	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	t0015	1559	1	0	0	1	0	0	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	t0016	1559	1	0	0	0	0	1	copy fasta	POU4F3	chr5	146333839	146346728
POU5F1_chr6_31159337_31175682	0/0	t0001	327	232	57	41	103	7	24	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/1	t0002	327	168	34	35	66	11	21	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	t0003	325	31	3	3	24	0	1	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	t0004	327	12	0	0	12	0	0	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	t0005	327	1	0	0	1	0	0	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	t0006	327	1	0	1	0	0	0	copy fasta	POU5F1	chr6	31159337	31175682
POU5F2_chr5_93728220_93746600	1/0	t0001	7395	184	37	32	94	8	12	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0002	7395	33	6	0	21	1	5	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0003	7395	17	0	1	15	0	1	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0004	7395	16	13	1	0	0	2	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0005	7394	13	0	0	13	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0006	7395	11	0	0	11	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0007	7394	11	2	7	0	0	2	copy fasta	POU5F2	chr5	93728220	93746600