JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POU5F2_chr5_93728220_93746600	0/0	t0008	7394	8	3	2	2	0	1	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/1	t0009	7395	7	0	3	0	2	1	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0010	7393	6	6	0	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0011	7395	6	0	0	6	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0012	7393	5	0	0	5	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0013	7396	5	5	0	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0014	7395	4	0	0	4	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0015	7395	3	3	0	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0016	7396	3	0	0	1	0	2	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0017	7394	2	2	0	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0018	7394	2	2	0	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0019	7395	2	2	0	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0020	7394	2	1	0	0	0	1	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0021	7395	2	0	2	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0022	7395	2	0	0	2	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0023	7396	2	2	0	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0024	7395	1	0	1	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0025	7394	1	0	0	1	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0026	7394	1	0	1	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0027	7395	1	0	0	0	0	1	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0028	7395	1	0	0	0	1	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0029	7395	1	1	0	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0030	7395	1	0	1	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0031	7395	1	0	1	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0032	7395	1	0	0	1	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0033	7395	1	0	0	1	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0034	7395	1	0	0	1	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0035	7395	1	0	0	1	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0036	7395	1	0	0	1	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0037	7395	1	0	0	0	0	1	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0038	7395	1	0	0	1	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0039	7395	1	0	0	1	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0040	7395	1	0	1	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0041	7395	1	0	0	1	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0042	7395	1	1	0	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0043	7395	1	1	0	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0044	7395	1	0	0	1	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0045	7395	1	0	0	1	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0046	7395	1	0	1	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0047	7395	1	0	0	0	0	1	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0048	7396	1	1	0	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0049	7396	1	1	0	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0050	7396	1	0	0	1	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	t0051	7395	1	1	0	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU6F1_chr12_51181936_51223062	0/1	t0001	3780	83	8	19	42	2	11	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0002	3778	40	0	10	29	0	1	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	1/0	t0003	3780	31	5	7	10	5	3	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0004	3780	31	6	7	14	1	3	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0005	3780	20	5	3	5	2	5	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0006	3780	13	0	3	5	2	3	copy fasta	POU6F1	chr12	51181936	51223062