JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POU6F1_chr12_51181936_51223062	0/0	t0007	3780	12	0	0	12	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0008	3780	9	0	0	9	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0009	3780	9	1	3	1	1	3	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0010	3780	9	0	1	7	0	1	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0011	3780	8	0	0	8	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0012	3780	7	0	6	1	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0013	3780	6	0	2	2	1	1	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0014	3780	6	4	2	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0015	3780	5	0	2	3	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0016	3780	5	1	3	0	1	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0017	3778	5	0	0	5	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0018	3785	4	0	0	4	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0019	3780	4	0	0	4	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0020	3780	4	0	0	4	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0021	3780	4	3	1	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0022	3780	4	0	0	3	0	1	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0023	3780	3	3	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0024	3778	3	0	1	2	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0025	3780	3	1	1	0	0	1	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0026	3780	3	3	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0027	3780	3	3	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0028	3780	3	3	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0029	3778	3	0	2	1	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0030	3780	3	0	0	3	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0031	3780	2	2	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0032	3780	2	2	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0033	3780	2	2	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0034	3780	2	2	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0035	3780	2	1	0	1	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0036	3780	2	2	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0037	3778	2	2	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0038	3780	2	0	0	0	0	2	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0039	3780	2	0	2	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0040	3780	2	2	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0041	3780	2	2	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0042	3780	2	0	0	2	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0043	3778	2	0	0	2	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0044	3780	2	0	0	1	0	1	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0045	3780	2	0	0	2	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0046	3780	2	0	0	2	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0047	3780	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0048	3780	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0049	3778	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0050	3780	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0051	3778	1	0	0	1	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0052	3780	1	0	0	0	0	1	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0053	3780	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0054	3780	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0055	3780	1	0	1	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0056	3780	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062