Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP2A3_chr17_3918873_3969437	0/0	t0016	1696	2	0	1	0	1	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0017	1696	2	0	0	0	1	1	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0018	1696	1	0	0	0	1	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0019	1715	1	0	0	1	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0020	1715	1	0	0	1	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0021	1696	1	0	0	0	0	1	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0022	1696	1	0	1	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0023	1696	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0024	1696	1	0	0	1	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0025	1696	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0026	1696	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0027	1696	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0028	1696	1	0	0	1	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0029	1696	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0030	1696	1	0	0	1	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0031	1696	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0032	1696	1	0	0	0	0	1	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0033	1713	1	0	0	1	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0034	1715	1	0	0	0	1	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0035	1696	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0036	1696	1	0	0	0	0	1	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0037	1696	1	0	1	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0038	1696	1	0	0	0	0	1	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	t0039	1696	1	0	1	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2B1_chr12_89583049_89713838	0/1	t0001	3400	256	48	52	109	12	34	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0002	3400	18	2	3	11	0	2	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	1/0	t0003	3400	10	8	0	0	1	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0004	3399	9	8	1	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0005	3400	9	9	0	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0006	3399	5	0	1	3	0	1	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0007	3399	3	3	0	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0008	3400	3	0	0	2	0	1	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0009	3400	2	0	1	0	1	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0010	3400	2	2	0	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0011	3400	2	0	0	1	0	1	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0012	3399	2	2	0	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0013	3400	1	1	0	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0014	3400	1	0	1	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0015	3400	1	0	0	1	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0016	3400	1	0	1	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0017	3400	1	0	0	1	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0018	3400	1	0	0	1	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0019	3400	1	0	0	1	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0020	3400	1	1	0	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0021	3400	1	1	0	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0022	3400	1	0	0	0	0	1	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	t0023	3400	1	1	0	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B2_chr3_10319023_10510586	0/0	t0001	5233	78	6	11	48	2	11	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0002	5233	39	6	3	24	1	5	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0003	5234	34	6	15	0	4	9	copy fasta	ATP2B2	chr3	10319023	10510586