JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POU6F1_chr12_51181936_51223062	0/0	t0107	3780	1	0	0	1	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0108	3780	1	0	0	0	1	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0109	3780	1	0	0	1	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0110	3778	1	0	0	1	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	t0111	3780	1	0	0	1	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F2_chr7_38972909_39473601	0/1	t0001	3960	61	26	12	17	1	4	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0002	3962	46	10	14	12	1	9	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0003	3964	9	0	1	4	0	4	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0004	3962	8	7	1	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0005	3961	5	0	1	0	1	3	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0006	3962	5	0	0	4	0	1	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0007	3964	3	0	2	0	0	1	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0008	3962	3	3	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0009	3962	2	0	2	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0010	3959	2	1	0	1	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0011	3963	2	2	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0012	3961	2	1	0	0	1	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0013	3960	2	2	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0014	3958	1	0	0	0	0	1	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0015	3959	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0016	3959	1	0	0	1	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0017	3961	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0018	3962	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0019	3964	1	0	1	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0020	3963	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	1/0	t0021	3961	1	0	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0022	3962	1	0	1	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0023	3962	1	0	0	1	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0024	3963	1	0	1	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0025	3964	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0026	3961	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0027	3960	1	0	0	0	0	1	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0028	3960	1	0	0	1	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0029	3960	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0030	3959	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0031	3962	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0032	3963	1	0	0	1	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	t0033	3961	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
PP2D1_chr3_19980346_20017264	1/1	t0001	227	174	25	48	72	10	17	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	t0002	227	114	52	12	34	3	13	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	t0003	227	77	4	8	49	1	15	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	t0004	227	26	16	7	0	2	1	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	t0005	227	3	2	1	0	0	0	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	t0006	227	1	1	0	0	0	0	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	t0007	227	1	0	0	1	0	0	copy fasta	PP2D1	chr3	19980346	20017264
PPA1_chr10_70197835_70238429	1/1	t0001	423	326	63	61	161	9	30	copy fasta	PPA1	chr10	70197835	70238429
PPA1_chr10_70197835_70238429	0/0	t0002	423	51	10	14	5	7	15	copy fasta	PPA1	chr10	70197835	70238429
PPA1_chr10_70197835_70238429	0/0	t0003	423	21	17	3	0	0	1	copy fasta	PPA1	chr10	70197835	70238429
PPA1_chr10_70197835_70238429	0/0	t0004	423	6	6	0	0	0	0	copy fasta	PPA1	chr10	70197835	70238429
PPA1_chr10_70197835_70238429	0/0	t0005	423	2	0	2	0	0	0	copy fasta	PPA1	chr10	70197835	70238429