JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPA1_chr10_70197835_70238429	0/0	t0006	423	1	1	0	0	0	0	copy fasta	PPA1	chr10	70197835	70238429
PPA1_chr10_70197835_70238429	0/0	t0007	423	1	1	0	0	0	0	copy fasta	PPA1	chr10	70197835	70238429
PPA2_chr4_105364077_105479062	1/1	t0001	661	195	37	41	85	7	23	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	t0002	678	112	23	16	62	4	7	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	t0003	678	22	7	10	0	3	2	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	t0004	662	17	10	1	6	0	0	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	t0005	679	6	6	0	0	0	0	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	t0006	679	5	5	0	0	0	0	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	t0007	678	4	3	1	0	0	0	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	t0008	661	2	0	0	0	0	2	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	t0009	677	1	1	0	0	0	0	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	t0010	661	1	0	1	0	0	0	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	t0011	656	1	0	0	1	0	0	copy fasta	PPA2	chr4	105364077	105479062
PPAN_chr19_10101362_10117012	0/1	t0001	881	262	42	42	131	8	38	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	1/0	t0002	881	115	24	22	59	1	8	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0003	881	17	17	0	0	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0004	881	8	5	0	2	1	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0005	881	7	0	5	0	2	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0006	881	6	5	1	0	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0007	881	5	0	4	1	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0008	881	5	0	5	0	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0009	881	3	0	3	0	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0010	881	3	3	0	0	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0011	881	2	0	0	0	1	1	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0012	881	1	0	0	1	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0013	881	1	0	0	0	0	1	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0014	881	1	1	0	0	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0015	881	1	1	0	0	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0016	881	1	0	0	1	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0017	881	1	0	0	1	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0018	881	1	1	0	0	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0019	881	1	1	0	0	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	t0020	881	1	0	0	0	1	0	copy fasta	PPAN	chr19	10101362	10117012
PPARA_chr22_46145526_46248755	1/0	t0001	8712	34	3	9	13	3	5	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0002	8714	21	8	2	9	0	2	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0003	8709	8	8	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0004	8717	8	7	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0005	8702	7	1	3	0	1	2	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0006	8712	7	6	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0007	8719	5	5	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0008	8712	4	1	0	0	0	3	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0009	8714	4	0	0	4	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0010	8708	4	0	1	0	0	3	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0011	8712	4	0	4	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0012	8701	3	3	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0013	8712	3	0	0	3	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0014	8708	3	3	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0015	8703	3	3	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0016	8702	3	3	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0017	8719	3	3	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755