JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPARA_chr22_46145526_46248755	0/0	t0018	8719	3	1	2	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/1	t0019	8710	2	0	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0020	8714	2	2	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0021	8712	2	0	2	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0022	8712	2	1	0	0	1	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0023	8710	2	0	0	0	0	2	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0024	8714	2	0	0	2	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0025	8713	2	0	0	2	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0026	8711	2	2	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0027	8708	2	1	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0028	8717	2	1	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0029	8711	2	2	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0030	8714	2	0	2	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0031	8702	1	0	0	0	0	1	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0032	8712	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0033	8711	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0034	8714	1	0	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0035	8710	1	0	0	0	0	1	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0036	8712	1	0	0	0	1	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0037	8712	1	0	0	0	0	1	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0038	8700	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0039	8701	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0040	8715	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0041	8713	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0042	8714	1	0	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0043	8711	1	0	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0044	8712	1	0	0	1	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0045	8712	1	0	0	0	0	1	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0046	8712	1	0	0	1	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0047	8712	1	0	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0048	8712	1	0	0	1	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0049	8712	1	0	0	1	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0050	8714	1	0	0	1	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0051	8711	1	0	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0052	8707	1	0	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0053	8714	1	0	0	0	0	1	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0054	8711	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0055	8712	1	0	0	1	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0056	8712	1	0	0	1	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0057	8714	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0058	8710	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0059	8710	1	0	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0060	8712	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0061	8709	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0062	8711	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0063	8707	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0064	8702	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0065	8701	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0066	8720	1	0	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0067	8721	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755