JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPARA_chr22_46145526_46248755	0/0	t0068	8721	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0069	8716	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0070	8710	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0071	8712	1	0	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0072	8714	1	0	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0073	8726	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0074	8728	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0075	8712	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0076	8711	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0077	8708	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0078	8714	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	t0079	8709	1	1	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARD_chr6_35337558_35433178	0/0	t0001	2409	105	19	25	41	2	18	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	1/1	t0002	2409	37	4	7	20	1	3	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0003	2409	17	9	5	0	1	2	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0004	2409	11	10	1	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0005	2409	8	7	0	1	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0006	2409	7	7	0	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0007	2409	7	6	1	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0008	2405	5	0	0	5	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0009	2409	4	0	0	3	0	1	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0010	2409	4	0	0	4	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0011	2409	4	2	1	0	0	1	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0012	2409	3	3	0	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0013	2410	3	3	0	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0014	2409	2	0	2	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0015	2409	2	2	0	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0016	2409	1	0	0	1	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0017	2409	1	1	0	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0018	2409	1	0	1	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0019	2409	1	1	0	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0020	2409	1	1	0	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0021	2409	1	1	0	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0022	2409	1	1	0	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0023	2409	1	0	1	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0024	2409	1	0	0	1	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0025	2409	1	0	0	1	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0026	2409	1	0	1	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0027	2409	1	1	0	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0028	2409	1	0	0	0	0	1	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0029	2409	1	1	0	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0030	2409	1	1	0	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0031	2409	1	1	0	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0032	2409	1	0	1	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0033	2409	1	0	0	1	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	t0034	2409	1	1	0	0	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARGC1A_chr4_23787021_23895047	0/0	t0001	3880	79	18	16	32	5	8	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0002	3882	29	10	7	5	4	3	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0003	3880	28	2	0	20	0	6	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0004	3888	16	0	4	9	0	3	copy fasta	PPARGC1A	chr4	23787021	23895047