JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPARGC1A_chr4_23787021_23895047	0/0	t0055	3884	1	0	0	0	0	1	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0056	3884	1	0	0	0	1	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0057	3886	1	0	1	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0058	3890	1	0	0	1	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0059	3892	1	0	0	1	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0060	3894	1	0	0	1	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0061	3894	1	1	0	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0062	3896	1	0	0	1	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0063	3884	1	1	0	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0064	3888	1	1	0	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0065	3892	1	0	0	1	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0066	3880	1	1	0	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0067	3884	1	0	0	0	0	1	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0068	3882	1	0	1	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0069	3884	1	0	1	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0070	3882	1	1	0	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0071	3882	1	0	1	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0072	3884	1	1	0	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0073	3884	1	1	0	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0074	3884	1	0	0	0	0	1	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0075	3882	1	1	0	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0076	3892	1	0	0	0	0	1	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0077	3886	1	1	0	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0078	3890	1	0	0	1	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0079	3892	1	0	0	1	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	t0080	3892	1	0	1	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1B_chr5_149725310_149860022	0/1	t0001	7498	70	23	14	25	1	6	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	1/0	t0002	7498	29	0	10	11	2	5	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0003	7498	23	0	2	17	1	3	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0004	7503	16	0	6	8	1	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0005	7498	16	7	1	7	0	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0006	7501	14	1	2	4	0	7	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0007	7498	9	0	0	9	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0008	7498	9	9	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0009	7499	8	6	2	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0010	7499	8	0	1	6	0	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0011	7502	7	0	7	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0012	7498	7	1	0	6	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0013	7498	6	2	1	2	0	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0014	7503	5	0	0	5	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0015	7497	5	0	0	4	0	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0016	7498	5	5	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0017	7499	4	4	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0018	7501	4	4	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0019	7498	4	0	2	0	1	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0020	7497	3	0	1	2	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0021	7498	3	1	2	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0022	7498	3	0	0	3	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0023	7497	3	0	0	1	0	2	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0024	7498	3	3	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022