JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPARGC1B_chr5_149725310_149860022	0/0	t0025	7498	3	0	2	0	0	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0026	7503	2	2	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0027	7498	2	1	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0028	7498	2	1	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0029	7500	2	0	1	0	1	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0030	7498	2	0	1	0	1	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0031	7498	2	2	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0032	7497	2	1	0	1	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0033	7502	1	0	0	1	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0034	7499	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0035	7502	1	0	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0036	7502	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0037	7502	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0038	7498	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0039	7498	1	0	0	0	1	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0040	7498	1	0	0	1	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0041	7498	1	0	0	0	0	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0042	7498	1	0	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0043	7498	1	0	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0044	7497	1	0	0	0	0	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0045	7498	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0046	7497	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0047	7498	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0048	7497	1	0	0	1	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0049	7497	1	0	0	1	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0050	7498	1	0	0	1	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0051	7498	1	0	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0052	7502	1	0	0	1	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0053	7498	1	0	0	0	0	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0054	7498	1	0	0	1	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0055	7498	1	0	0	0	0	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0056	7498	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0057	7498	1	0	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0058	7499	1	0	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0059	7497	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0060	7498	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0061	7500	1	0	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0062	7501	1	0	0	0	1	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0063	7498	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0064	7498	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0065	7498	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0066	7498	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0067	7498	1	0	0	1	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0068	7498	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0069	7498	1	0	0	1	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0070	7498	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	t0071	7498	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARG_chr3_12284070_12439344	1/1	t0001	347	284	75	63	112	10	22	copy fasta	PPARG	chr3	12284070	12439344
PPARG_chr3_12284070_12439344	0/0	t0002	347	10	9	1	0	0	0	copy fasta	PPARG	chr3	12284070	12439344
PPAT_chr4_56388362_56440615	1/0	t0001	2129	87	18	12	46	5	5	copy fasta	PPAT	chr4	56388362	56440615