JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPAT_chr4_56388362_56440615	0/0	t0002	2130	55	0	1	45	0	9	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/1	t0003	2127	51	8	17	6	4	15	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0004	2129	50	5	12	28	1	4	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0005	2124	41	8	4	25	2	2	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0006	2129	24	1	5	17	0	1	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0007	2127	13	13	0	0	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0008	2140	10	9	1	0	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0009	2129	8	7	1	0	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0010	2130	3	3	0	0	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0011	2129	3	2	0	1	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0012	2130	3	3	0	0	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0013	2129	3	0	0	3	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0014	2128	3	0	0	2	1	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0015	2129	3	0	0	3	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0016	2138	2	2	0	0	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0017	2129	2	2	0	0	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0018	2130	2	0	0	2	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0019	2131	2	1	1	0	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0020	2129	1	1	0	0	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0021	2139	1	1	0	0	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0022	2128	1	0	0	0	0	1	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0023	2127	1	0	0	1	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0024	2129	1	1	0	0	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0025	2129	1	0	0	1	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0026	2129	1	0	0	1	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0027	2131	1	0	0	1	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0028	2124	1	0	0	1	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0029	2124	1	0	0	0	1	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0030	2129	1	1	0	0	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0031	2130	1	0	0	0	0	1	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0032	2129	1	1	0	0	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0033	2128	1	0	0	1	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0034	2129	1	0	0	1	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0035	2128	1	0	0	1	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0036	2129	1	0	0	1	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0037	2129	1	0	0	1	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	t0038	2126	1	1	0	0	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPBP_chr4_73981439_73993190	1/1	t0001	921	343	84	52	165	9	31	copy fasta	PPBP	chr4	73981439	73993190
PPBP_chr4_73981439_73993190	0/0	t0002	921	8	4	1	0	1	2	copy fasta	PPBP	chr4	73981439	73993190
PPBP_chr4_73981439_73993190	0/0	t0003	920	4	0	4	0	0	0	copy fasta	PPBP	chr4	73981439	73993190
PPBP_chr4_73981439_73993190	0/0	t0004	921	4	0	0	0	0	4	copy fasta	PPBP	chr4	73981439	73993190
PPBP_chr4_73981439_73993190	0/0	t0005	921	2	0	2	0	0	0	copy fasta	PPBP	chr4	73981439	73993190
PPBP_chr4_73981439_73993190	0/0	t0006	923	1	0	0	1	0	0	copy fasta	PPBP	chr4	73981439	73993190
PPBP_chr4_73981439_73993190	0/0	t0007	921	1	0	1	0	0	0	copy fasta	PPBP	chr4	73981439	73993190
PPBP_chr4_73981439_73993190	0/0	t0008	921	1	0	0	0	1	0	copy fasta	PPBP	chr4	73981439	73993190
PPBP_chr4_73981439_73993190	0/0	t0009	921	1	0	0	1	0	0	copy fasta	PPBP	chr4	73981439	73993190
PPBP_chr4_73981439_73993190	0/0	t0010	921	1	0	0	1	0	0	copy fasta	PPBP	chr4	73981439	73993190
PPBP_chr4_73981439_73993190	0/0	t0011	921	1	0	0	0	1	0	copy fasta	PPBP	chr4	73981439	73993190
PPBP_chr4_73981439_73993190	0/0	t0012	921	1	0	0	0	0	1	copy fasta	PPBP	chr4	73981439	73993190
PPCDC_chr15_75018590_75055726	1/1	t0001	1601	387	85	64	181	14	41	copy fasta	PPCDC	chr15	75018590	75055726