JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPCDC_chr15_75018590_75055726	0/0	t0002	1601	5	0	0	5	0	0	copy fasta	PPCDC	chr15	75018590	75055726
PPCDC_chr15_75018590_75055726	0/0	t0003	1601	1	0	1	0	0	0	copy fasta	PPCDC	chr15	75018590	75055726
PPCDC_chr15_75018590_75055726	0/0	t0004	1601	1	0	1	0	0	0	copy fasta	PPCDC	chr15	75018590	75055726
PPCDC_chr15_75018590_75055726	0/0	t0005	1601	1	0	0	1	0	0	copy fasta	PPCDC	chr15	75018590	75055726
PPCDC_chr15_75018590_75055726	0/0	t0006	1611	1	0	0	1	0	0	copy fasta	PPCDC	chr15	75018590	75055726
PPCDC_chr15_75018590_75055726	0/0	t0007	1601	1	1	0	0	0	0	copy fasta	PPCDC	chr15	75018590	75055726
PPCDC_chr15_75018590_75055726	0/0	t0008	1601	1	0	0	0	0	1	copy fasta	PPCDC	chr15	75018590	75055726
PPCS_chr1_42451543_42466236	1/1	t0001	1334	187	41	44	66	11	23	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	t0002	1334	183	30	24	102	5	22	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	t0003	1334	8	7	1	0	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	t0004	1335	3	3	0	0	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	t0005	1333	3	3	0	0	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	t0006	1334	3	0	0	3	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	t0007	1334	2	2	0	0	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	t0008	1335	1	0	0	1	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	t0009	1335	1	0	0	1	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	t0010	1334	1	0	0	0	0	1	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	t0011	1334	1	1	0	0	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	t0012	1334	1	1	0	0	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	t0013	1334	1	0	0	1	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	t0014	1334	1	0	1	0	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPDPFL_chr8_49067344_49081093	1/0	t0001	1104	131	36	28	35	7	24	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPFL_chr8_49067344_49081093	0/1	t0002	1104	129	3	22	92	3	8	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPFL_chr8_49067344_49081093	0/0	t0003	1104	121	12	26	66	7	10	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPFL_chr8_49067344_49081093	0/0	t0004	1104	29	28	1	0	0	0	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPFL_chr8_49067344_49081093	0/0	t0005	1104	12	12	0	0	0	0	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPFL_chr8_49067344_49081093	0/0	t0006	1104	2	2	0	0	0	0	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPFL_chr8_49067344_49081093	0/0	t0007	1104	2	0	1	0	1	0	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPFL_chr8_49067344_49081093	0/0	t0008	1104	1	0	0	1	0	0	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPFL_chr8_49067344_49081093	0/0	t0009	1104	1	1	0	0	0	0	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPFL_chr8_49067344_49081093	0/0	t0010	1104	1	1	0	0	0	0	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPFL_chr8_49067344_49081093	0/0	t0011	1104	1	0	0	1	0	0	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPFL_chr8_49067344_49081093	0/0	t0012	1104	1	0	0	1	0	0	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPFL_chr8_49067344_49081093	0/0	t0013	1104	1	1	0	0	0	0	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPF_chr20_63515765_63527206	1/1	t0001	483	227	18	50	108	16	33	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0002	483	48	32	6	1	1	8	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0003	482	43	15	12	15	0	1	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0004	482	29	18	6	1	1	3	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0005	483	27	0	1	25	0	1	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0006	482	6	6	0	0	0	0	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0007	484	2	0	0	2	0	0	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0008	483	2	0	0	2	0	0	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0009	483	1	0	0	1	0	0	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0010	484	1	0	0	0	0	1	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0011	483	1	0	0	1	0	0	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0012	482	1	0	0	1	0	0	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0013	483	1	1	0	0	0	0	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0014	483	1	0	1	0	0	0	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0015	504	1	0	0	0	0	1	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0016	483	1	1	0	0	0	0	copy fasta	PPDPF	chr20	63515765	63527206