JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPDPF_chr20_63515765_63527206	0/0	t0017	482	1	1	0	0	0	0	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	t0018	483	1	0	0	1	0	0	copy fasta	PPDPF	chr20	63515765	63527206
PPEF1_chrX_18702645_18832917	1/1	t0001	567	218	58	40	92	6	20	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	t0002	567	2	0	0	2	0	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	t0003	563	1	0	0	1	0	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	t0004	567	1	0	0	1	0	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	t0005	565	1	0	0	1	0	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	t0006	567	1	0	0	0	1	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF2_chr4_75854867_75907452	1/1	t0001	1082	184	49	39	69	7	18	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	t0002	1082	54	12	18	4	9	11	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	t0003	1082	23	22	1	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	t0004	1082	3	1	1	0	0	1	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	t0005	1082	2	2	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	t0006	1082	2	1	1	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	t0007	1082	1	0	0	1	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	t0008	1082	1	1	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPFIA1_chr11_70265690_70389396	1/1	t0001	1632	130	19	21	65	8	15	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	t0002	1632	65	19	15	14	5	12	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	t0003	1632	55	33	13	4	2	3	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	t0004	1632	11	11	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	t0005	1632	5	5	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	t0006	1632	4	1	0	3	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	t0007	1632	2	2	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	t0008	1632	2	0	2	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	t0009	1632	1	1	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	t0010	1632	1	0	0	0	1	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	t0011	1632	1	0	1	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	t0012	1632	1	1	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	t0013	1632	1	1	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	t0014	1632	1	0	0	0	0	1	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	t0015	1632	1	0	0	0	0	1	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	t0016	1632	1	1	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA2_chr12_81252975_81764350	0/0	t0001	1901	101	22	25	40	2	12	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA2_chr12_81252975_81764350	0/0	t0002	1901	30	7	2	18	0	3	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA2_chr12_81252975_81764350	0/0	t0003	1901	15	2	5	4	1	3	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA2_chr12_81252975_81764350	0/0	t0004	1902	10	5	0	4	1	0	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA2_chr12_81252975_81764350	0/0	t0005	1901	4	1	0	2	0	1	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA2_chr12_81252975_81764350	0/0	t0006	1902	4	0	0	4	0	0	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA2_chr12_81252975_81764350	0/0	t0007	1901	2	1	1	0	0	0	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA2_chr12_81252975_81764350	0/0	t0008	1902	1	0	1	0	0	0	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA2_chr12_81252975_81764350	0/0	t0009	1901	1	0	0	0	0	1	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA3_chr19_49114544_49156026	0/1	t0001	999	202	76	49	43	7	26	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	1/0	t0002	999	153	11	21	97	7	16	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	t0003	999	2	2	0	0	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	t0004	999	1	0	0	1	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	t0005	999	1	0	0	1	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	t0006	999	1	1	0	0	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	t0007	999	1	1	0	0	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	t0008	999	1	1	0	0	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA4_chr1_203021491_203083736	1/1	t0001	2885	88	5	18	53	2	8	copy fasta	PPFIA4	chr1	203021491	203083736