Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP2B2_chr3_10319023_10510586	0/0	t0004	5233	19	5	6	2	4	2	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0005	5233	12	12	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0006	5235	10	10	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0007	5233	10	8	2	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0008	5234	5	0	4	0	0	1	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0009	5234	4	0	0	0	0	4	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/1	t0010	5233	4	2	1	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0011	5233	4	3	1	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0012	5233	4	0	0	4	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0013	5233	4	0	0	3	0	1	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0014	5231	4	0	1	2	0	1	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0015	5235	3	0	0	2	0	1	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0016	5235	3	0	0	3	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0017	5235	3	0	2	0	1	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0018	5233	3	3	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0019	5233	3	0	3	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0020	5235	2	0	0	0	0	2	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0021	5233	2	2	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0022	5233	2	1	1	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0023	5231	2	2	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0024	5233	2	2	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0025	5233	1	0	1	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0026	5234	1	0	0	1	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0027	5235	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0028	5234	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0029	5233	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0030	5235	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0031	5233	1	0	0	1	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0032	5233	1	0	0	1	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0033	5233	1	0	0	1	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	1/0	t0034	5233	1	0	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0035	5234	1	0	0	1	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0036	5234	1	0	1	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0037	5234	1	0	1	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0038	5235	1	0	0	0	0	1	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0039	5234	1	0	0	1	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0040	5233	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0041	5233	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0042	5235	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0043	5233	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0044	5234	1	0	0	0	0	1	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0045	5233	1	0	1	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0046	5229	1	0	1	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0047	5234	1	0	1	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0048	5233	1	0	0	0	0	1	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0049	5233	1	0	0	1	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0050	5233	1	0	0	1	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0051	5233	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0052	5233	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0053	5234	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586