JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPFIA4_chr1_203021491_203083736	0/0	t0002	2885	76	11	16	37	3	9	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0003	2885	62	17	15	18	5	7	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0004	2885	43	1	11	24	2	5	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0005	2885	40	3	10	15	3	9	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0006	2885	32	12	2	13	1	4	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0007	2885	11	10	1	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0008	2885	9	0	0	9	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0009	2885	8	8	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0010	2885	7	0	4	3	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0011	2885	5	5	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0012	2885	4	4	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0013	2885	3	3	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0014	2885	3	3	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0015	2885	3	0	0	0	0	3	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0016	2885	2	2	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0017	2885	2	0	0	2	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0018	2885	2	2	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0019	2885	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0020	2885	1	0	1	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0021	2885	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0022	2885	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0023	2885	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0024	2885	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0025	2885	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0026	2885	1	0	0	1	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0027	2885	1	0	0	1	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0028	2885	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0029	2885	1	0	0	1	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0030	2885	1	0	0	1	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0031	2885	1	0	0	0	0	1	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0032	2885	1	0	0	1	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0033	2885	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0034	2885	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0035	2885	1	0	0	1	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	t0036	2885	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIBP1_chr12_27519206_27700564	0/0	t0001	2967	120	21	28	59	3	9	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	1/1	t0002	2966	57	9	0	35	0	11	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0003	2966	26	0	8	18	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0004	2965	25	0	6	13	3	3	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0005	2967	16	6	1	8	0	1	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0006	2968	11	8	3	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0007	2967	9	4	4	1	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0008	2968	7	7	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0009	2967	6	1	4	0	1	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0010	2968	5	5	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0011	2966	3	0	1	0	1	1	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0012	2968	3	3	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0013	2967	2	2	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0014	2966	2	2	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0015	2965	1	0	1	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564