JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPFIBP1_chr12_27519206_27700564	0/0	t0016	2968	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0017	2967	1	0	1	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0018	2966	1	0	1	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0019	2967	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0020	2966	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0021	2965	1	0	0	1	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0022	2966	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0023	2966	1	0	0	1	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0024	2966	1	0	1	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0025	2966	1	0	0	1	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0026	2967	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0027	2966	1	0	1	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0028	2967	1	0	0	1	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0029	2965	1	0	0	1	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0030	2966	1	0	0	1	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0031	2966	1	0	0	0	0	1	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0032	2967	1	0	0	1	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0033	2967	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0034	2966	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0035	2966	1	0	0	1	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	t0036	2968	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP2_chr11_7508999_7658756	1/1	t0001	698	270	58	63	91	15	41	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	t0002	698	15	9	4	0	1	1	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	t0003	698	13	8	4	0	0	1	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	t0004	698	5	5	0	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	t0005	698	3	2	1	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	t0006	698	2	2	0	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	t0007	698	1	1	0	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	t0008	698	1	1	0	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	t0009	698	1	1	0	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	t0010	698	1	1	0	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	t0011	698	1	1	0	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	t0012	698	1	1	0	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	t0013	698	1	1	0	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	t0014	698	1	0	0	0	0	1	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	t0015	698	1	1	0	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	t0016	698	1	0	0	1	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPHLN1_chr12_42321167_42447181	1/1	t0001	756	306	53	60	145	10	36	copy fasta	PPHLN1	chr12	42321167	42447181
PPHLN1_chr12_42321167_42447181	0/0	t0002	756	46	12	8	22	2	2	copy fasta	PPHLN1	chr12	42321167	42447181
PPHLN1_chr12_42321167_42447181	0/0	t0003	756	9	9	0	0	0	0	copy fasta	PPHLN1	chr12	42321167	42447181
PPHLN1_chr12_42321167_42447181	0/0	t0004	757	6	0	2	4	0	0	copy fasta	PPHLN1	chr12	42321167	42447181
PPHLN1_chr12_42321167_42447181	0/0	t0005	756	4	4	0	0	0	0	copy fasta	PPHLN1	chr12	42321167	42447181
PPHLN1_chr12_42321167_42447181	0/0	t0006	756	3	3	0	0	0	0	copy fasta	PPHLN1	chr12	42321167	42447181
PPHLN1_chr12_42321167_42447181	0/0	t0007	756	1	0	0	1	0	0	copy fasta	PPHLN1	chr12	42321167	42447181
PPHLN1_chr12_42321167_42447181	0/0	t0008	756	1	1	0	0	0	0	copy fasta	PPHLN1	chr12	42321167	42447181
PPIAL4A_chr1_120884771_120895530	0/0	t0001	266	173	6	23	123	8	13	copy fasta	PPIAL4A	chr1	120884771	120895530
PPIAL4A_chr1_120884771_120895530	1/1	t0002	266	74	8	3	51	1	9	copy fasta	PPIAL4A	chr1	120884771	120895530
PPIAL4A_chr1_120884771_120895530	0/0	t0003	266	30	9	3	18	0	0	copy fasta	PPIAL4A	chr1	120884771	120895530
PPIAL4A_chr1_120884771_120895530	0/0	t0004	266	1	0	0	0	1	0	copy fasta	PPIAL4A	chr1	120884771	120895530
PPIAL4A_chr1_120884771_120895530	0/0	t0005	266	1	1	0	0	0	0	copy fasta	PPIAL4A	chr1	120884771	120895530