JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPIAL4A_chr1_120884771_120895530	0/0	t0006	266	1	0	1	0	0	0	copy fasta	PPIAL4A	chr1	120884771	120895530
PPIAL4C_chr1_149578848_149589607	1/1	t0001	266	335	68	64	158	14	29	copy fasta	PPIAL4C	chr1	149578848	149589607
PPIAL4C_chr1_149578848_149589607	0/0	t0002	266	95	14	13	58	3	7	copy fasta	PPIAL4C	chr1	149578848	149589607
PPIAL4C_chr1_149578848_149589607	0/0	t0003	266	11	5	1	3	0	2	copy fasta	PPIAL4C	chr1	149578848	149589607
PPIAL4C_chr1_149578848_149589607	0/0	t0004	266	3	0	1	0	0	2	copy fasta	PPIAL4C	chr1	149578848	149589607
PPIAL4C_chr1_149578848_149589607	0/0	t0005	266	2	0	1	0	1	0	copy fasta	PPIAL4C	chr1	149578848	149589607
PPIAL4C_chr1_149578848_149589607	0/0	t0006	266	1	0	0	1	0	0	copy fasta	PPIAL4C	chr1	149578848	149589607
PPIAL4C_chr1_149578848_149589607	0/0	t0007	266	1	1	0	0	0	0	copy fasta	PPIAL4C	chr1	149578848	149589607
PPIAL4D_chr1_145236415_145247174	0/0	t0001	266	384	85	72	171	18	38	copy fasta	PPIAL4D	chr1	145236415	145247174
PPIAL4D_chr1_145236415_145247174	0/0	t0002	266	7	4	1	2	0	0	copy fasta	PPIAL4D	chr1	145236415	145247174
PPIAL4D_chr1_145236415_145247174	0/0	t0003	266	3	3	0	0	0	0	copy fasta	PPIAL4D	chr1	145236415	145247174
PPIAL4D_chr1_145236415_145247174	0/0	t0004	266	1	0	0	1	0	0	copy fasta	PPIAL4D	chr1	145236415	145247174
PPIAL4D_chr1_145236415_145247174	0/0	t0005	266	1	0	1	0	0	0	copy fasta	PPIAL4D	chr1	145236415	145247174
PPIAL4E_chr1_144367875_144378634	0/0	t0001	266	120	22	23	57	3	15	copy fasta	PPIAL4E	chr1	144367875	144378634
PPIAL4E_chr1_144367875_144378634	0/0	t0002	266	82	24	19	27	3	9	copy fasta	PPIAL4E	chr1	144367875	144378634
PPIAL4F_chr1_144587893_144598652	0/0	t0001	266	163	42	26	71	11	13	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	t0002	266	53	4	16	27	1	5	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	t0003	266	2	2	0	0	0	0	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	t0004	266	2	0	0	2	0	0	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4G_chr1_148477548_148488302	1/1	t0001	261	338	93	56	139	14	34	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	t0002	261	107	2	20	74	2	9	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	t0003	261	2	0	0	2	0	0	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	t0004	261	1	0	0	1	0	0	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	t0005	261	1	1	0	0	0	0	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	t0006	261	1	0	0	0	0	1	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4H_chr1_146339006_146349765	1/0	t0001	266	341	56	62	173	13	36	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	t0002	266	53	21	4	19	1	8	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	t0003	266	12	4	0	4	2	2	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	t0004	266	5	5	0	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/1	t0005	266	2	0	0	0	0	1	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	t0006	266	1	0	0	0	0	1	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	t0007	266	1	0	1	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	t0008	266	1	0	1	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIA_chr7_44791681_44808117	0/0	t0001	1745	199	44	28	117	0	10	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0002	1741	98	11	27	45	6	9	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0003	1739	33	3	18	3	5	4	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/1	t0004	1743	13	0	5	3	0	4	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0005	1739	11	0	3	1	1	6	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0006	1744	11	3	0	8	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0007	1746	11	2	1	7	0	1	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0008	1738	6	5	1	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0009	1745	5	4	0	1	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0010	1743	4	4	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0011	1745	4	2	2	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0012	1743	3	3	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	1/0	t0013	1740	2	0	1	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0014	1740	2	2	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0015	1741	2	2	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0016	1742	2	0	0	2	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0017	1741	2	2	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117