JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPIA_chr7_44791681_44808117	0/0	t0018	1739	2	0	0	0	0	2	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0019	1736	2	0	0	0	0	2	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0020	1739	2	0	0	0	1	1	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0021	1742	1	1	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0022	1742	1	1	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0023	1744	1	1	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0024	1745	1	1	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0025	1742	1	1	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0026	1743	1	1	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0027	1745	1	1	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0028	1746	1	1	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0029	1738	1	1	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0030	1738	1	1	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0031	1740	1	0	0	0	0	1	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0032	1741	1	0	0	0	1	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0033	1745	1	0	0	1	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0034	1745	1	0	0	1	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0035	1745	1	1	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	t0036	1741	1	0	0	1	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIB_chr15_64150817_64168022	0/0	t0001	244	190	23	43	93	12	19	copy fasta	PPIB	chr15	64150817	64168022
PPIB_chr15_64150817_64168022	1/1	t0002	243	121	68	11	16	2	22	copy fasta	PPIB	chr15	64150817	64168022
PPIB_chr15_64150817_64168022	0/0	t0003	245	16	1	1	10	1	3	copy fasta	PPIB	chr15	64150817	64168022
PPIB_chr15_64150817_64168022	0/0	t0004	244	7	0	2	0	1	4	copy fasta	PPIB	chr15	64150817	64168022
PPIB_chr15_64150817_64168022	0/0	t0005	243	5	5	0	0	0	0	copy fasta	PPIB	chr15	64150817	64168022
PPIB_chr15_64150817_64168022	0/0	t0006	244	1	1	0	0	0	0	copy fasta	PPIB	chr15	64150817	64168022
PPIB_chr15_64150817_64168022	0/0	t0007	245	1	0	0	1	0	0	copy fasta	PPIB	chr15	64150817	64168022
PPIB_chr15_64150817_64168022	0/0	t0008	244	1	0	1	0	0	0	copy fasta	PPIB	chr15	64150817	64168022
PPIC_chr5_123018250_123041725	0/1	t0001	728	133	28	28	57	6	13	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0002	726	125	23	23	68	1	10	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0003	730	25	5	6	12	1	1	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	1/0	t0004	726	18	0	0	16	0	1	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0005	732	15	14	1	0	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0006	732	10	8	0	1	0	1	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0007	722	10	0	6	2	1	1	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0008	738	9	1	3	2	1	2	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0009	740	6	1	2	0	1	2	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0010	728	5	5	0	0	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0011	724	4	3	0	1	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0012	724	4	2	0	0	2	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0013	724	2	2	0	0	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0014	738	2	0	2	0	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0015	734	2	2	0	0	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0016	730	2	0	2	0	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0017	740	1	0	1	0	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0018	738	1	0	0	0	0	1	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0019	736	1	0	1	0	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0020	734	1	0	0	0	1	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0021	726	1	0	0	1	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0022	726	1	0	0	1	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0023	736	1	0	1	0	0	0	copy fasta	PPIC	chr5	123018250	123041725