JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPIC_chr5_123018250_123041725	0/0	t0024	736	1	1	0	0	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0025	732	1	1	0	0	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	t0026	726	1	0	0	1	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPID_chr4_158704127_158728396	1/0	t0001	718	221	54	40	100	6	20	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/1	t0002	718	90	32	7	30	3	17	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	t0003	718	16	0	1	13	0	2	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	t0004	718	15	7	0	8	0	0	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	t0005	718	2	0	0	0	1	1	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	t0006	718	1	1	0	0	0	0	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	t0007	718	1	0	0	1	0	0	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	t0008	718	1	1	0	0	0	0	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	t0009	718	1	1	0	0	0	0	copy fasta	PPID	chr4	158704127	158728396
PPIE_chr1_39733882_39761769	1/0	t0001	3434	181	48	25	84	4	19	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/1	t0002	3434	102	8	21	49	6	17	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0003	3434	35	3	1	31	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0004	3434	26	4	2	15	1	4	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0005	3434	17	13	3	0	1	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0006	3434	16	4	7	0	3	2	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0007	3434	8	4	1	1	1	1	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0008	3434	7	0	0	6	0	1	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0009	3434	6	0	0	6	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0010	3434	4	0	3	0	0	1	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0011	3434	4	3	1	0	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0012	3434	4	0	3	0	0	1	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0013	3434	3	0	0	3	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0014	3434	3	0	0	3	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0015	3434	2	2	0	0	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0016	3434	2	2	0	0	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0017	3434	2	2	0	0	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0018	3434	2	0	2	0	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0019	3434	2	0	2	0	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0020	3434	1	0	0	1	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0021	3434	1	0	0	1	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0022	3434	1	1	0	0	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0023	3434	1	1	0	0	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0024	3434	1	0	0	1	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0025	3434	1	0	0	1	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0026	3434	1	0	1	0	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	t0027	3434	1	1	0	0	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIF_chr10_79342469_79360334	0/0	t0001	1573	203	31	38	106	10	18	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	1/1	t0002	1573	105	1	15	65	4	18	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0003	1573	14	0	14	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0004	1573	13	13	0	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0005	1573	11	10	1	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0006	1573	11	9	0	1	0	1	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0007	1573	7	7	0	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0008	1573	6	6	0	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0009	1573	5	0	0	5	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0010	1573	3	3	0	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0011	1573	3	1	0	0	1	1	copy fasta	PPIF	chr10	79342469	79360334