JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPIF_chr10_79342469_79360334	0/0	t0012	1573	3	0	3	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0013	1573	3	3	0	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0014	1573	3	0	0	3	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0015	1573	2	2	0	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0016	1573	2	0	2	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0017	1573	2	2	0	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0018	1573	2	2	0	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0019	1573	2	2	0	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0020	1573	2	0	0	2	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0021	1573	1	0	0	1	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0022	1573	1	0	0	0	1	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0023	1573	1	1	0	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0024	1573	1	0	0	1	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0025	1573	1	0	1	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	t0026	1573	1	1	0	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIG_chr2_169579351_169646406	1/0	t0001	4093	103	18	28	40	4	12	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0002	4092	51	0	8	33	3	7	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0003	4094	44	6	2	32	1	3	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0004	4090	36	22	6	1	2	5	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0005	4092	26	0	0	22	1	3	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/1	t0006	4093	22	1	9	8	0	3	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0007	4093	20	20	0	0	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0008	4090	17	2	7	2	2	4	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0009	4092	10	0	0	9	0	1	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0010	4093	8	0	0	8	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0011	4093	8	8	0	0	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0012	4093	5	5	0	0	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0013	4092	4	4	0	0	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0014	4093	3	1	0	2	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0015	4093	2	2	0	0	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0016	4090	2	0	0	2	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0017	4092	2	0	0	2	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0018	4090	2	0	0	1	0	1	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0019	4093	2	0	0	2	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0020	4093	1	0	0	1	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0021	4092	1	0	0	1	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0022	4092	1	0	0	1	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0023	4093	1	0	0	0	1	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0024	4090	1	0	0	0	0	1	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0025	4093	1	1	0	0	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0026	4094	1	1	0	0	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0027	4093	1	1	0	0	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0028	4093	1	1	0	0	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0029	4093	1	0	1	0	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0030	4094	1	0	0	1	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0031	4090	1	0	0	1	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0032	4092	1	1	0	0	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0033	4092	1	0	1	0	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	t0034	4093	1	0	0	1	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIH_chr1_42653423_42681758	1/1	t0001	221	370	89	60	161	14	44	copy fasta	PPIH	chr1	42653423	42681758