JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPIH_chr1_42653423_42681758	0/0	t0002	221	1	1	0	0	0	0	copy fasta	PPIH	chr1	42653423	42681758
PPIH_chr1_42653423_42681758	0/0	t0003	221	1	0	0	1	0	0	copy fasta	PPIH	chr1	42653423	42681758
PPIL1_chr6_36849829_36879803	1/1	t0001	1016	261	67	44	121	8	19	copy fasta	PPIL1	chr6	36849829	36879803
PPIL1_chr6_36849829_36879803	0/0	t0002	1017	139	18	31	66	6	18	copy fasta	PPIL1	chr6	36849829	36879803
PPIL1_chr6_36849829_36879803	0/0	t0003	1016	2	2	0	0	0	0	copy fasta	PPIL1	chr6	36849829	36879803
PPIL1_chr6_36849829_36879803	0/0	t0004	1016	2	2	0	0	0	0	copy fasta	PPIL1	chr6	36849829	36879803
PPIL1_chr6_36849829_36879803	0/0	t0005	1016	1	1	0	0	0	0	copy fasta	PPIL1	chr6	36849829	36879803
PPIL1_chr6_36849829_36879803	0/0	t0006	1017	1	1	0	0	0	0	copy fasta	PPIL1	chr6	36849829	36879803
PPIL1_chr6_36849829_36879803	0/0	t0007	1017	1	0	1	0	0	0	copy fasta	PPIL1	chr6	36849829	36879803
PPIL1_chr6_36849829_36879803	0/0	t0008	1017	1	0	0	0	0	1	copy fasta	PPIL1	chr6	36849829	36879803
PPIL1_chr6_36849829_36879803	0/0	t0009	1017	1	0	0	1	0	0	copy fasta	PPIL1	chr6	36849829	36879803
PPIL1_chr6_36849829_36879803	0/0	t0010	1017	1	1	0	0	0	0	copy fasta	PPIL1	chr6	36849829	36879803
PPIL2_chr22_21661012_21702907	0/0	t0001	2506	123	22	31	55	3	12	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0002	2506	71	12	8	37	3	11	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0003	2506	62	28	12	13	2	7	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	1/0	t0004	2506	49	0	2	42	0	4	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0005	2506	17	1	9	0	2	5	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0006	2506	11	1	4	0	3	3	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0007	2506	8	6	2	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0008	2506	8	7	1	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/1	t0009	2506	5	3	0	1	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0010	2506	4	2	0	0	1	1	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0011	2506	2	2	0	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0012	2485	2	2	0	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0013	2506	2	0	0	0	0	2	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0014	2506	2	2	0	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0015	2506	1	1	0	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0016	2506	1	1	0	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0017	2506	1	0	0	1	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0018	2506	1	0	0	1	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0019	2506	1	0	0	0	0	1	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0020	2506	1	1	0	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0021	2506	1	1	0	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0022	2506	1	0	1	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0023	2506	1	1	0	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0024	2506	1	0	0	1	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0025	2506	1	1	0	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	t0026	2506	1	0	0	1	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL3_chr2_200865907_200894077	1/1	t0001	681	270	47	56	121	10	34	copy fasta	PPIL3	chr2	200865907	200894077
PPIL3_chr2_200865907_200894077	0/0	t0002	685	55	39	9	3	4	0	copy fasta	PPIL3	chr2	200865907	200894077
PPIL3_chr2_200865907_200894077	0/0	t0003	681	5	0	3	2	0	0	copy fasta	PPIL3	chr2	200865907	200894077
PPIL3_chr2_200865907_200894077	0/0	t0004	681	5	5	0	0	0	0	copy fasta	PPIL3	chr2	200865907	200894077
PPIL3_chr2_200865907_200894077	0/0	t0005	681	1	1	0	0	0	0	copy fasta	PPIL3	chr2	200865907	200894077
PPIL4_chr6_149499495_149551043	1/1	t0001	997	281	68	51	119	6	35	copy fasta	PPIL4	chr6	149499495	149551043
PPIL4_chr6_149499495_149551043	0/0	t0002	997	8	8	0	0	0	0	copy fasta	PPIL4	chr6	149499495	149551043
PPIL4_chr6_149499495_149551043	0/0	t0003	997	8	8	0	0	0	0	copy fasta	PPIL4	chr6	149499495	149551043
PPIL4_chr6_149499495_149551043	0/0	t0004	997	6	6	0	0	0	0	copy fasta	PPIL4	chr6	149499495	149551043
PPIL4_chr6_149499495_149551043	0/0	t0005	997	1	0	0	0	0	1	copy fasta	PPIL4	chr6	149499495	149551043
PPIL4_chr6_149499495_149551043	0/0	t0006	997	1	0	1	0	0	0	copy fasta	PPIL4	chr6	149499495	149551043
PPIL4_chr6_149499495_149551043	0/0	t0007	997	1	0	0	1	0	0	copy fasta	PPIL4	chr6	149499495	149551043