JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPIL6_chr6_109385215_109445628	0/0	t0001	2651	116	8	17	72	2	17	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	1/1	t0002	2650	71	5	24	30	4	6	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0003	2649	32	12	1	19	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0004	2636	31	28	3	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0005	2652	21	2	4	12	1	2	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0006	2651	16	0	3	9	2	2	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0007	2651	16	2	3	9	1	1	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0008	2644	14	1	3	10	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0009	2650	9	0	0	8	0	1	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0010	2651	9	0	5	3	1	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0011	2650	6	6	0	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0012	2650	5	5	0	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0013	2651	4	0	1	0	3	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0014	2652	3	0	2	1	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0015	2652	3	3	0	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0016	2651	3	3	0	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0017	2651	2	0	0	2	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0018	2652	2	1	1	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0019	2644	2	0	2	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0020	2652	2	1	0	1	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0021	2635	2	2	0	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0022	2652	2	2	0	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0023	2651	2	2	0	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0024	2648	2	0	0	2	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0025	2651	2	0	0	2	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0026	2650	2	0	2	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0027	2650	1	0	0	1	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0028	2652	1	0	0	1	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0029	2650	1	0	1	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0030	2651	1	0	1	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0031	2651	1	0	0	0	0	1	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0032	2651	1	1	0	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0033	2651	1	1	0	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0034	2653	1	1	0	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0035	2650	1	0	0	1	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0036	2651	1	1	0	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0037	2653	1	0	1	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0038	2651	1	0	0	1	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0039	2651	1	0	0	0	0	1	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0040	2650	1	0	0	1	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0041	2649	1	0	0	1	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0042	2650	1	0	0	0	0	1	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	t0043	2636	1	1	0	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIP5K1_chr15_43528475_43595208	1/1	t0001	1359	61	0	18	21	4	16	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	t0002	1359	45	10	9	13	4	9	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	t0003	1359	4	0	1	0	2	1	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	t0004	1361	3	0	0	2	0	1	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	t0005	1359	1	0	0	0	0	1	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K2_chr5_103115301_103217799	1/0	t0001	11638	67	11	12	35	1	7	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	t0002	11636	42	6	9	18	3	6	copy fasta	PPIP5K2	chr5	103115301	103217799