JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPIP5K2_chr5_103115301_103217799	0/0	t0053	11636	1	0	0	1	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	t0054	11636	1	0	0	1	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	t0055	11645	1	1	0	0	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	t0056	11636	1	0	0	1	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPL_chr16_4877507_4942148	0/0	t0001	981	143	5	30	84	6	18	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/1	t0002	981	139	26	27	62	6	17	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	t0003	981	29	28	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	1/0	t0004	981	15	14	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	t0005	981	8	8	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	t0006	981	8	8	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	t0007	981	5	0	2	0	1	2	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	t0008	981	4	0	0	4	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	t0009	981	4	4	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	t0010	981	4	3	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	t0011	981	3	0	2	0	0	1	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	t0012	981	3	0	3	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	t0013	981	2	2	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	t0014	981	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	t0015	981	1	0	0	0	1	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	t0016	981	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	t0017	981	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	t0018	1002	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPM1A_chr14_60244221_60304087	1/1	t0001	7083	64	9	13	28	2	10	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0002	7083	30	2	9	14	1	4	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0003	7084	27	1	7	8	3	8	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0004	7084	13	9	4	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0005	7084	11	1	2	4	1	3	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0006	7089	9	9	0	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0007	7083	8	8	0	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0008	7086	5	2	0	3	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0009	7083	4	4	0	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0010	7087	3	0	0	3	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0011	7084	3	0	2	1	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0012	7085	3	2	1	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0013	7083	3	0	3	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0014	7083	3	3	0	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0015	7074	3	0	0	3	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0016	7084	2	1	1	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0017	7083	2	2	0	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0018	7085	2	0	0	2	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0019	7084	2	0	0	0	0	2	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0020	7082	2	0	2	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0021	7084	2	2	0	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0022	7084	2	2	0	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0023	7084	2	2	0	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0024	7083	2	0	0	0	1	1	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0025	7082	2	2	0	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0026	7083	2	2	0	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0027	7083	2	0	0	1	1	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	t0028	7083	2	0	0	2	0	0	copy fasta	PPM1A	chr14	60244221	60304087