Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP2B2_chr3_10319023_10510586	0/0	t0054	5234	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0055	5233	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0056	5233	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0057	5233	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	t0058	5231	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B3_chrX_153512642_153587929	0/1	t0001	3114	122	28	22	51	5	15	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0002	3112	38	5	9	14	1	9	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0003	3115	12	1	5	4	0	2	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0004	3112	9	0	0	9	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0005	3113	9	7	0	1	0	1	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0006	3113	6	0	2	4	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0007	3114	5	5	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0008	3115	4	4	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0009	3112	3	2	1	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0010	3115	3	0	0	3	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0011	3114	3	3	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0012	3114	3	0	0	3	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0013	3114	3	1	0	1	0	1	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0014	3114	3	0	1	2	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0015	3113	2	1	1	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0016	3116	2	2	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0017	3114	2	0	2	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0018	3115	2	0	0	1	0	1	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0019	3112	2	2	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0020	3112	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0021	3107	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0022	3116	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0023	3115	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0024	3114	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0025	3114	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0026	3113	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0027	3113	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	1/0	t0028	3112	1	0	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0029	3110	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0030	3111	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0031	3114	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0032	3113	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0033	3113	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0034	3114	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0035	3115	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0036	3118	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0037	3115	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0038	3113	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0039	3116	1	0	0	0	0	1	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0040	3113	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0041	3115	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0042	3113	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0043	3113	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0044	3114	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0045	3115	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929