JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPM1A_chr14_60244221_60304087	0/0	t0079	7083	1	0	0	1	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1B_chr2_44163875_44236472	0/1	t0001	1178	263	73	43	107	11	28	copy fasta	PPM1B	chr2	44163875	44236472
PPM1B_chr2_44163875_44236472	1/0	t0002	1169	75	13	15	43	1	2	copy fasta	PPM1B	chr2	44163875	44236472
PPM1B_chr2_44163875_44236472	0/0	t0003	1187	5	5	0	0	0	0	copy fasta	PPM1B	chr2	44163875	44236472
PPM1B_chr2_44163875_44236472	0/0	t0004	1178	4	0	4	0	0	0	copy fasta	PPM1B	chr2	44163875	44236472
PPM1B_chr2_44163875_44236472	0/0	t0005	1178	4	0	0	4	0	0	copy fasta	PPM1B	chr2	44163875	44236472
PPM1B_chr2_44163875_44236472	0/0	t0006	1178	2	2	0	0	0	0	copy fasta	PPM1B	chr2	44163875	44236472
PPM1B_chr2_44163875_44236472	0/0	t0007	1178	2	0	2	0	0	0	copy fasta	PPM1B	chr2	44163875	44236472
PPM1B_chr2_44163875_44236472	0/0	t0008	1187	1	1	0	0	0	0	copy fasta	PPM1B	chr2	44163875	44236472
PPM1B_chr2_44163875_44236472	0/0	t0009	1178	1	0	0	0	0	1	copy fasta	PPM1B	chr2	44163875	44236472
PPM1B_chr2_44163875_44236472	0/0	t0010	1169	1	0	0	0	0	1	copy fasta	PPM1B	chr2	44163875	44236472
PPM1D_chr17_60595193_60671280	1/1	t0001	2951	127	40	21	54	7	3	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0002	2951	21	0	0	20	0	1	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0003	2952	19	19	0	0	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0004	2951	18	17	1	0	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0005	2951	5	5	0	0	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0006	2949	4	2	2	0	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0007	2951	3	0	0	3	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0008	2952	3	1	0	2	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0009	2951	2	0	0	2	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0010	2952	2	0	0	2	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0011	2951	1	1	0	0	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0012	2952	1	1	0	0	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0013	2951	1	0	0	1	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0014	2951	1	1	0	0	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0015	2951	1	0	0	0	0	1	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0016	2951	1	1	0	0	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0017	2951	1	0	0	0	1	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0018	2951	1	0	0	1	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0019	2951	1	0	0	1	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	t0020	2951	1	0	0	0	0	1	copy fasta	PPM1D	chr17	60595193	60671280
PPM1E_chr17_58750854_58990179	0/1	t0001	4292	105	30	21	43	2	8	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0002	4292	94	28	17	37	4	8	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0003	4292	54	1	11	32	3	7	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0004	4292	11	1	0	10	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0005	4292	8	8	0	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0006	4291	6	0	6	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	1/0	t0007	4293	4	2	1	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0008	4293	4	4	0	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0009	4292	4	0	1	0	2	1	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0010	4254	3	3	0	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0011	4292	3	0	2	0	1	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0012	4292	2	0	1	0	0	1	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0013	4292	2	0	2	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0014	4292	1	0	0	1	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0015	4292	1	1	0	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0016	4292	1	1	0	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0017	4291	1	0	1	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0018	4292	1	0	0	0	0	1	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0019	4292	1	1	0	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179