JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPM1E_chr17_58750854_58990179	0/0	t0020	4292	1	0	1	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0021	4292	1	0	0	1	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0022	4292	1	0	0	0	0	1	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0023	4292	1	1	0	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0024	4292	1	1	0	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	t0025	4247	1	0	0	0	0	1	copy fasta	PPM1E	chr17	58750854	58990179
PPM1F_chr22_21914425_21957848	1/0	t0001	3785	146	38	23	60	5	19	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0002	3785	41	0	0	38	0	3	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0003	3786	34	8	8	15	0	3	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/1	t0004	3786	26	3	9	10	1	2	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0005	3786	18	4	7	0	4	3	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0006	3785	16	12	4	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0007	3785	10	9	1	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0008	3785	5	0	4	0	0	1	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0009	3785	4	0	0	4	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0010	3785	4	4	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0011	3785	4	0	1	0	2	1	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0012	3785	3	0	0	3	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0013	3860	3	0	3	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0014	3785	3	2	1	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0015	3786	2	2	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0016	3786	2	2	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0017	3785	2	0	0	2	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0018	3785	2	0	0	2	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0019	3785	1	1	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0020	3786	1	1	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0021	3786	1	0	1	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0022	3786	1	0	0	0	0	1	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0023	3786	1	0	0	0	0	1	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0024	3785	1	0	1	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0025	3785	1	0	0	1	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0026	3785	1	0	0	1	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0027	3785	1	1	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0028	3785	1	1	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0029	3785	1	1	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0030	3785	1	0	0	1	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0031	3785	1	0	0	1	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0032	3785	1	0	1	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0033	3785	1	1	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0034	3785	1	1	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	t0035	3785	1	1	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1G_chr2_27376199_27414591	0/1	t0001	570	130	62	28	22	4	13	copy fasta	PPM1G	chr2	27376199	27414591
PPM1G_chr2_27376199_27414591	1/0	t0002	570	122	19	28	50	4	20	copy fasta	PPM1G	chr2	27376199	27414591
PPM1G_chr2_27376199_27414591	0/0	t0003	570	3	3	0	0	0	0	copy fasta	PPM1G	chr2	27376199	27414591
PPM1G_chr2_27376199_27414591	0/0	t0004	570	2	0	2	0	0	0	copy fasta	PPM1G	chr2	27376199	27414591
PPM1G_chr2_27376199_27414591	0/0	t0005	570	1	0	0	1	0	0	copy fasta	PPM1G	chr2	27376199	27414591
PPM1G_chr2_27376199_27414591	0/0	t0006	570	1	0	0	0	0	1	copy fasta	PPM1G	chr2	27376199	27414591
PPM1G_chr2_27376199_27414591	0/0	t0007	570	1	0	0	1	0	0	copy fasta	PPM1G	chr2	27376199	27414591
PPM1H_chr12_62638994_62940150	1/0	t0001	4910	41	1	11	25	0	3	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0002	4911	37	5	5	23	1	3	copy fasta	PPM1H	chr12	62638994	62940150