JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPM1H_chr12_62638994_62940150	0/1	t0003	4913	20	2	4	8	1	4	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0004	4911	18	0	1	13	0	4	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0005	4912	17	5	0	10	1	1	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0006	4910	13	1	6	3	0	3	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0007	4909	6	5	1	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0008	4912	6	6	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0009	4912	5	0	5	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0010	4911	5	4	1	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0011	4911	4	2	1	1	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0012	4910	4	0	0	2	0	2	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0013	4911	4	4	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0014	4912	4	4	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0015	4912	4	3	0	0	0	1	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0016	4912	3	2	0	1	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0017	4910	2	0	1	0	0	1	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0018	4909	2	2	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0019	4911	2	0	1	0	0	1	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0020	4911	2	2	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0021	4910	2	2	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0022	4910	2	2	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0023	4910	2	2	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0024	4916	2	2	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0025	4912	2	2	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0026	4912	2	2	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0027	4912	2	1	0	1	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0028	4913	2	0	0	2	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0029	4911	2	0	1	1	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0030	4913	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0031	4911	1	0	0	1	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0032	4910	1	0	0	1	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0033	4912	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0034	4910	1	0	1	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0035	4910	1	0	0	0	1	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0036	4909	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0037	4911	1	0	0	0	1	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0038	4912	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0039	4912	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0040	4912	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0041	4912	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0042	4912	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0043	4908	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0044	4908	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0045	4910	1	0	0	1	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0046	4910	1	0	0	1	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0047	4910	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0048	4910	1	0	0	0	1	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0049	4908	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0050	4911	1	0	0	1	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0051	4911	1	0	1	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0052	4911	1	0	0	1	0	0	copy fasta	PPM1H	chr12	62638994	62940150