JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPM1H_chr12_62638994_62940150	0/0	t0053	4911	1	0	0	1	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0054	4910	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0055	4916	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0056	4912	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0057	4913	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0058	4913	1	0	0	0	0	1	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0059	4913	1	0	1	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0060	4913	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0061	4913	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0062	4911	1	0	1	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0063	4912	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	t0064	4911	1	0	0	1	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1J_chr1_112704998_112720332	1/1	t0001	197	408	90	75	180	15	46	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	t0002	197	6	6	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	t0003	197	5	1	3	0	1	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	t0004	197	1	0	0	1	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	t0005	197	1	0	0	1	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	t0006	197	1	1	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1K_chr4_88252620_88289561	0/0	t0001	5189	124	24	29	55	1	15	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0002	5179	45	2	3	38	1	1	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0003	5192	29	10	6	2	4	7	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0004	5190	20	3	2	11	1	3	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0005	5190	16	3	3	9	0	1	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0006	5189	10	9	1	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0007	5190	7	1	2	4	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0008	5193	7	1	3	0	2	1	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0009	5191	7	7	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0010	5193	5	1	3	1	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0011	5188	5	1	1	3	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/1	t0012	5194	4	0	2	0	0	1	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0013	5192	4	0	0	4	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0014	5179	4	0	4	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0015	5178	4	4	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0016	5193	3	0	1	0	0	2	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0017	5190	3	3	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0018	5189	3	0	0	2	0	1	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0019	5190	3	1	2	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0020	5188	3	3	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0021	5179	2	1	0	1	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0022	5179	2	0	0	2	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0023	5191	2	0	0	2	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0024	5189	2	0	0	2	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0025	5189	2	0	1	0	1	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0026	5189	2	0	1	0	1	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0027	5191	1	0	1	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0028	5178	1	1	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0029	5193	1	0	0	1	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0030	5194	1	0	0	0	1	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0031	5192	1	0	0	1	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0032	5192	1	1	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561