JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPM1K_chr4_88252620_88289561	1/0	t0033	5191	1	0	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0034	5192	1	1	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0035	5171	1	1	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0036	5191	1	0	0	1	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0037	5191	1	1	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0038	5191	1	0	1	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0039	5190	1	1	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0040	5179	1	0	0	1	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0041	5179	1	0	0	1	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0042	5179	1	1	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0043	5179	1	0	0	1	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0044	5179	1	0	1	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0045	5178	1	0	0	1	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0046	5193	1	0	1	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0047	5191	1	0	0	0	0	1	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0048	5191	1	1	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0049	5190	1	1	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0050	5190	1	0	0	0	0	1	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0051	5191	1	0	0	0	0	1	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0052	5189	1	1	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0053	5190	1	0	0	1	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0054	5189	1	0	0	0	1	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0055	5189	1	0	0	0	1	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0056	5189	1	1	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0057	5190	1	1	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0058	5188	1	0	0	0	1	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0059	5181	1	0	0	0	0	1	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	t0060	5189	1	0	0	0	1	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1L_chr3_160751231_161083902	0/0	t0001	9824	36	9	13	7	1	6	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0002	9824	25	0	5	20	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0003	9824	23	9	4	6	1	3	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0004	9825	20	3	4	11	2	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0005	9825	13	1	5	7	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0006	9818	12	2	6	0	0	4	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0007	9825	12	0	5	4	0	3	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0008	9826	10	7	3	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0009	9820	4	4	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0010	9825	4	4	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0011	9824	3	0	0	3	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0012	9825	3	2	1	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0013	9825	3	3	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0014	9824	2	2	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0015	9825	2	2	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0016	9828	2	0	0	2	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0017	9824	2	0	0	2	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0018	9825	2	2	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0019	9824	1	0	0	1	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0020	9825	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0021	9824	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0022	9824	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902