JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPM1L_chr3_160751231_161083902	0/0	t0023	9824	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0024	9825	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0025	9825	1	0	0	0	0	1	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0026	9825	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0027	9825	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0028	9825	1	0	0	1	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0029	9825	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0030	9825	1	0	0	1	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0031	9825	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0032	9825	1	0	0	1	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0033	9825	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0034	9825	1	0	1	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0035	9825	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0036	9825	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0037	9825	1	0	0	1	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0038	9824	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0039	9825	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0040	9824	1	0	0	1	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0041	9824	1	0	1	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0042	9825	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0043	9825	1	0	0	1	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0044	9825	1	0	0	0	0	1	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0045	9825	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	t0046	9825	1	0	0	1	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1M_chr3_52240759_52255599	1/1	t0001	852	367	82	77	150	16	40	copy fasta	PPM1M	chr3	52240759	52255599
PPM1M_chr3_52240759_52255599	0/0	t0002	850	6	6	0	0	0	0	copy fasta	PPM1M	chr3	52240759	52255599
PPM1M_chr3_52240759_52255599	0/0	t0003	852	5	0	0	5	0	0	copy fasta	PPM1M	chr3	52240759	52255599
PPM1M_chr3_52240759_52255599	0/0	t0004	852	1	0	1	0	0	0	copy fasta	PPM1M	chr3	52240759	52255599
PPM1M_chr3_52240759_52255599	0/0	t0005	852	1	0	0	1	0	0	copy fasta	PPM1M	chr3	52240759	52255599
PPM1N_chr19_45493443_45507513	1/1	t0001	459	163	29	40	71	9	12	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0002	460	70	12	12	37	1	8	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0003	458	65	15	12	32	1	5	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0004	453	39	6	6	12	2	13	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0005	450	38	9	5	19	0	5	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0006	451	10	1	0	9	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0007	459	8	8	0	0	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0008	451	7	7	0	0	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0009	454	6	1	1	2	0	2	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0010	450	6	0	4	2	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0011	449	3	0	0	3	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0012	460	3	0	0	3	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0013	458	3	1	1	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0014	459	2	0	0	2	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0015	458	2	0	1	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0016	459	2	0	0	0	1	1	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0017	458	2	2	0	0	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0018	459	1	0	0	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0019	460	1	0	0	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0020	459	1	0	0	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0021	447	1	0	0	0	0	1	copy fasta	PPM1N	chr19	45493443	45507513