JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPM1N_chr19_45493443_45507513	0/0	t0022	459	1	0	0	0	0	1	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0023	458	1	0	0	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	t0024	453	1	1	0	0	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPME1_chr11_74166289_74259703	1/1	t0001	1327	223	38	42	101	11	29	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0002	1327	87	20	5	52	3	7	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0003	1327	34	28	0	5	0	1	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0004	1327	4	3	1	0	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0005	1327	4	0	0	4	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0006	1327	3	0	0	3	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0007	1327	3	0	3	0	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0008	1327	2	0	0	2	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0009	1327	2	1	1	0	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0010	1327	1	0	0	1	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0011	1327	1	1	0	0	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0012	1327	1	1	0	0	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0013	1327	1	1	0	0	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0014	1327	1	1	0	0	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0015	1327	1	0	0	0	0	1	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0016	1327	1	1	0	0	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	t0017	1327	1	1	0	0	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPOX_chr1_161161426_161176220	1/0	t0001	300	195	46	36	73	9	30	copy fasta	PPOX	chr1	161161426	161176220
PPOX_chr1_161161426_161176220	0/1	t0002	300	160	24	26	93	7	9	copy fasta	PPOX	chr1	161161426	161176220
PPOX_chr1_161161426_161176220	0/0	t0003	300	7	1	4	0	1	1	copy fasta	PPOX	chr1	161161426	161176220
PPOX_chr1_161161426_161176220	0/0	t0004	300	1	1	0	0	0	0	copy fasta	PPOX	chr1	161161426	161176220
PPOX_chr1_161161426_161176220	0/0	t0005	300	1	0	0	0	1	0	copy fasta	PPOX	chr1	161161426	161176220
PPP1CA_chr11_67393183_67406858	1/1	t0001	429	361	93	67	157	10	32	copy fasta	PPP1CA	chr11	67393183	67406858
PPP1CA_chr11_67393183_67406858	0/0	t0002	429	4	0	0	4	0	0	copy fasta	PPP1CA	chr11	67393183	67406858
PPP1CA_chr11_67393183_67406858	0/0	t0003	429	4	0	3	0	1	0	copy fasta	PPP1CA	chr11	67393183	67406858
PPP1CA_chr11_67393183_67406858	0/0	t0004	429	2	2	0	0	0	0	copy fasta	PPP1CA	chr11	67393183	67406858
PPP1CA_chr11_67393183_67406858	0/0	t0005	429	1	0	0	0	0	1	copy fasta	PPP1CA	chr11	67393183	67406858
PPP1CA_chr11_67393183_67406858	0/0	t0006	429	1	1	0	0	0	0	copy fasta	PPP1CA	chr11	67393183	67406858
PPP1CA_chr11_67393183_67406858	0/0	t0007	429	1	0	1	0	0	0	copy fasta	PPP1CA	chr11	67393183	67406858
PPP1CA_chr11_67393183_67406858	0/0	t0008	429	1	0	0	0	1	0	copy fasta	PPP1CA	chr11	67393183	67406858
PPP1CA_chr11_67393183_67406858	0/0	t0009	429	1	0	1	0	0	0	copy fasta	PPP1CA	chr11	67393183	67406858
PPP1CA_chr11_67393183_67406858	0/0	t0010	429	1	0	0	1	0	0	copy fasta	PPP1CA	chr11	67393183	67406858
PPP1CA_chr11_67393183_67406858	0/0	t0011	429	1	0	0	0	0	1	copy fasta	PPP1CA	chr11	67393183	67406858
PPP1CB_chr2_28746830_28807940	0/0	t0001	3934	144	16	32	77	6	13	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/1	t0002	3932	61	14	19	12	6	9	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0003	3932	42	8	5	24	2	3	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	1/0	t0004	3933	21	6	6	7	1	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0005	3932	12	0	0	12	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0006	3935	10	1	0	4	1	4	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0007	3932	9	9	0	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0008	3932	8	6	2	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0009	3933	6	0	0	5	0	1	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0010	3932	5	4	1	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0011	3931	5	0	3	1	0	1	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0012	3934	5	4	1	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0013	3927	4	4	0	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0014	3933	3	0	1	2	0	0	copy fasta	PPP1CB	chr2	28746830	28807940