JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1CB_chr2_28746830_28807940	0/0	t0015	3931	2	0	1	1	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0016	3934	2	0	0	0	0	2	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0017	3934	2	2	0	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0018	3932	1	0	0	1	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0019	3932	1	0	1	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0020	3932	1	0	0	1	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0021	3932	1	0	0	1	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0022	3933	1	1	0	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0023	3934	1	1	0	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0024	3932	1	0	0	0	0	1	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0025	3932	1	0	0	1	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0026	3932	1	1	0	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0027	3933	1	1	0	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0028	3933	1	1	0	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0029	3933	1	1	0	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0030	3934	1	0	1	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0031	3934	1	1	0	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0032	3935	1	0	0	1	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0033	3935	1	1	0	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0034	3934	1	0	0	1	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0035	3934	1	0	0	1	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0036	3931	1	1	0	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0037	3935	1	0	1	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0038	3930	1	1	0	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0039	3931	1	1	0	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0040	3932	1	1	0	0	0	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0041	3931	1	0	0	0	1	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/0	t0042	3932	1	0	0	0	1	0	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CC_chr12_110714680_110747891	1/1	t0001	1581	282	54	60	110	15	41	copy fasta	PPP1CC	chr12	110714680	110747891
PPP1CC_chr12_110714680_110747891	0/0	t0002	1581	46	35	5	0	1	5	copy fasta	PPP1CC	chr12	110714680	110747891
PPP1CC_chr12_110714680_110747891	0/0	t0003	1581	2	0	0	2	0	0	copy fasta	PPP1CC	chr12	110714680	110747891
PPP1CC_chr12_110714680_110747891	0/0	t0004	1581	2	0	2	0	0	0	copy fasta	PPP1CC	chr12	110714680	110747891
PPP1CC_chr12_110714680_110747891	0/0	t0005	1581	2	0	0	2	0	0	copy fasta	PPP1CC	chr12	110714680	110747891
PPP1CC_chr12_110714680_110747891	0/0	t0006	1581	2	0	2	0	0	0	copy fasta	PPP1CC	chr12	110714680	110747891
PPP1CC_chr12_110714680_110747891	0/0	t0007	1581	1	0	1	0	0	0	copy fasta	PPP1CC	chr12	110714680	110747891
PPP1CC_chr12_110714680_110747891	0/0	t0008	1567	1	1	0	0	0	0	copy fasta	PPP1CC	chr12	110714680	110747891
PPP1R10_chr6_30595413_30622243	0/0	t0001	1689	381	70	72	184	13	42	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/1	t0002	1690	17	8	2	6	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0003	1689	16	0	0	16	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0004	1690	7	1	2	1	0	3	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0005	1689	6	1	4	0	1	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0006	1690	5	4	1	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0007	1690	5	0	0	5	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0008	1689	2	2	0	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0009	1689	2	0	2	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0010	1691	1	1	0	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0011	1690	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0012	1689	1	0	1	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0013	1689	1	0	1	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0014	1689	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243