JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R10_chr6_30595413_30622243	0/0	t0015	1689	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0016	1689	1	0	0	0	0	1	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0017	1689	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0018	1689	1	1	0	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0019	1689	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0020	1689	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0021	1689	1	0	0	0	0	1	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0022	1689	1	0	1	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0023	1690	1	1	0	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0024	1689	1	1	0	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0025	1689	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0026	1689	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	t0027	1689	1	0	0	0	0	1	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R11_chr6_30062198_30075333	0/1	t0001	1241	239	28	38	144	8	20	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	t0002	1241	87	45	11	24	1	6	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	t0003	1241	33	2	8	20	1	2	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	t0004	1241	29	3	2	18	5	1	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	t0005	1241	21	0	8	0	3	10	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	t0006	1241	18	4	11	2	0	1	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	t0007	1241	4	2	1	0	0	1	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	t0008	1241	4	1	1	0	0	2	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	t0009	1241	2	2	0	0	0	0	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	t0010	1241	1	0	0	0	0	1	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	t0011	1241	1	1	0	0	0	0	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	t0012	1241	1	0	0	1	0	0	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	t0013	1241	1	0	0	1	0	0	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	t0014	1241	1	0	0	1	0	0	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	t0015	1241	1	0	0	1	0	0	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R12A_chr12_79768568_79940097	0/1	t0001	2526	70	4	16	32	5	12	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0002	2528	56	0	4	44	0	8	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0003	2523	55	17	6	25	0	7	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0004	2526	43	2	6	30	0	5	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0005	2529	30	21	6	0	3	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0006	2527	19	4	0	13	0	2	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0007	2522	10	10	0	0	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0008	2529	7	6	1	0	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0009	2526	7	6	1	0	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0010	2526	4	4	0	0	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0011	2523	2	0	0	2	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0012	2523	1	0	0	0	0	1	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0013	2529	1	1	0	0	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0014	2524	1	0	0	1	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0015	2529	1	1	0	0	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0016	2527	1	0	0	0	0	1	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	1/0	t0017	2528	1	0	0	0	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0018	2526	1	0	0	1	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0019	2540	1	0	0	1	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	t0020	2526	1	0	0	1	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12B_chr1_202343699_202597702	0/0	t0001	12308	22	4	2	15	1	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0002	12300	18	0	7	8	2	1	copy fasta	PPP1R12B	chr1	202343699	202597702