Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP2B3_chrX_153512642_153587929	0/0	t0046	3113	1	0	1	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0047	3113	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0048	3112	1	0	0	0	1	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0049	3112	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0050	3113	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0051	3112	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0052	3114	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	t0053	3114	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B4_chr1_203621832_203749081	0/0	t0001	5080	39	6	3	27	0	3	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0002	5078	38	5	9	16	5	3	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0003	5080	35	0	2	26	2	5	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0004	5080	35	1	10	18	3	3	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0005	5080	20	1	7	9	2	1	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0006	5078	17	3	0	10	0	4	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0007	5079	11	1	2	7	0	1	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/1	t0008	5080	11	8	1	0	1	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0009	5079	9	1	0	8	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	1/0	t0010	5080	8	7	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0011	5079	8	0	0	8	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0012	5079	6	3	0	3	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0013	5080	6	5	0	0	1	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0014	5078	4	3	1	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0015	5080	4	4	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0016	5080	3	0	0	3	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0017	5078	3	2	1	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0018	5080	3	0	0	3	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0019	5078	3	0	2	0	0	1	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0020	5079	3	1	0	1	0	1	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0021	5077	2	0	0	2	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0022	5076	2	2	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0023	5079	2	2	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0024	5078	2	2	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0025	5077	2	0	1	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0026	5076	2	2	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0027	5081	2	1	0	0	0	1	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0028	5076	2	2	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0029	5078	2	2	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0030	5079	2	0	2	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0031	5079	2	2	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0032	5077	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0033	5079	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0034	5080	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0035	5080	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0036	5079	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0037	5077	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0038	5078	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0039	5079	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0040	5079	1	0	1	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0041	5078	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0042	5079	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081