JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R12B_chr1_202343699_202597702	0/0	t0053	12300	1	0	1	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0054	12296	1	0	0	0	1	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0055	12287	1	0	0	0	1	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0056	12304	1	0	0	0	0	1	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0057	12312	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0058	12292	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0059	12288	1	0	0	0	0	1	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0060	12305	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0061	12297	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0062	12305	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0063	12312	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0064	12297	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0065	12296	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0066	12297	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0067	12300	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0068	12284	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0069	12297	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0070	12312	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0071	12304	1	0	0	0	0	1	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0072	12304	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0073	12300	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0074	12316	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0075	12312	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0076	12312	1	0	1	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0077	12308	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0078	12308	1	0	1	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0079	12304	1	0	0	0	1	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0080	12300	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0081	12300	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0082	12296	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0083	12296	1	0	1	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0084	12292	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0085	12292	1	0	1	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0086	12296	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0087	12304	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0088	12304	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	1/0	t0089	12296	1	0	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0090	12308	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0091	12308	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0092	12304	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0093	12304	1	0	0	0	0	1	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0094	12308	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0095	12304	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0096	12300	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0097	12296	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0098	12292	1	0	0	0	0	1	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0099	12323	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0100	12307	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0101	12307	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0102	12295	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702